trunk/htsworkflow/pipelines/test/testdata/Summary-pipeline110.htm

   1 <!--RUN_TIME Tue Oct 28 09:45:50 2008 -->
   2 <!--SOFTWARE_VERSION @(#) $Id: jerboa.pl,v 1.10 2008/07/23 15:18:30 mzerara Exp $-->
   3 <html>
   4 <body>
   5
   6 <a name="Top"><h2><title>081017_HWI-EAS229_0062_30J55AAXX Summary</title></h2></a>
   7 <h1>Summary Information For Experiment 081017_HWI-EAS229_0062_30J55AAXX on Machine HWI-EAS229</h1>
   8 <h2><br></br>Chip Summary<br></br></h2>
   9 <table border="1" cellpadding="5">
  10 <tr><td>Machine</td><td>HWI-EAS229</td></tr>
  11 <tr><td>Run Folder</td><td>081017_HWI-EAS229_0062_30J55AAXX</td></tr>
  12 <tr><td>Chip ID</td><td>unknown</td></tr>
  13 </table>
  14 <h2><br></br>Chip Results Summary<br></br></h2>
  15 <table border="1" cellpadding="5">
  16 <tr>
  17 <td>Clusters</td>
  18 <td>Clusters (PF)</td>
  19 <td>Yield (kbases)</td>
  20 </tr>
  21 <tr><td>162491175</td>
  22 <td>99622159</td>
  23 <td>3686019</td>
  24 </tr>
  25 </table>
  26 <h2><br></br>Lane Parameter Summary<br></br></h2>
  27 <table border="1" cellpadding="5">
  28 <tr>
  29 <td>Lane</td>
  30 <td>Sample ID</td>
  31 <td>Sample Target</td>
  32 <td>Sample Type</td>
  33 <td>Length</td>
  34 <td>Filter</td>
  35 <td>Chast. Thresh.</td>
  36 <td>Num Tiles</td>
  37 <td>Tiles</td>
  38 </tr>
  39 <tr>
  40 <td>1</td>
  41 <td>unknown</td>
  42 <td>mm9</td>
  43 <td>ELAND</td>
  44 <td>37</td>
  45 <td>'((FAILED_CHASTITY<=1))'</td>
  46 <td>0.6</td>
  47 <td>100</td>
  48 <td><a href="#Lane1">Lane 1</a></td>
  49 </tr>
  50 <tr>
  51 <td>2</td>
  52 <td>unknown</td>
  53 <td>mm9</td>
  54 <td>ELAND</td>
  55 <td>37</td>
  56 <td>'((FAILED_CHASTITY<=1))'</td>
  57 <td>0.6</td>
  58 <td>100</td>
  59 <td><a href="#Lane2">Lane 2</a></td>
  60 </tr>
  61 <tr>
  62 <td>3</td>
  63 <td>unknown</td>
  64 <td>mm9</td>
  65 <td>ELAND</td>
  66 <td>37</td>
  67 <td>'((FAILED_CHASTITY<=1))'</td>
  68 <td>0.6</td>
  69 <td>100</td>
  70 <td><a href="#Lane3">Lane 3</a></td>
  71 </tr>
  72 <tr>
  73 <td>4</td>
  74 <td>unknown</td>
  75 <td>hg18</td>
  76 <td>ELAND</td>
  77 <td>37</td>
  78 <td>'((FAILED_CHASTITY<=1))'</td>
  79 <td>0.6</td>
  80 <td>100</td>
  81 <td><a href="#Lane4">Lane 4</a></td>
  82 </tr>
  83 <tr>
  84 <td>5</td>
  85 <td>unknown</td>
  86 <td>hg18</td>
  87 <td>ELAND</td>
  88 <td>37</td>
  89 <td>'((FAILED_CHASTITY<=1))'</td>
  90 <td>0.6</td>
  91 <td>100</td>
  92 <td><a href="#Lane5">Lane 5</a></td>
  93 </tr>
  94 <tr>
  95 <td>6</td>
  96 <td>unknown</td>
  97 <td>mm9</td>
  98 <td>ELAND</td>
  99 <td>37</td>
 100 <td>'((FAILED_CHASTITY<=1))'</td>
 101 <td>0.6</td>
 102 <td>100</td>
 103 <td><a href="#Lane6">Lane 6</a></td>
 104 </tr>
 105 <tr>
 106 <td>7</td>
 107 <td>unknown</td>
 108 <td>mm9</td>
 109 <td>ELAND</td>
 110 <td>37</td>
 111 <td>'((FAILED_CHASTITY<=1))'</td>
 112 <td>0.6</td>
 113 <td>100</td>
 114 <td><a href="#Lane7">Lane 7</a></td>
 115 </tr>
 116 <tr>
 117 <td>8</td>
 118 <td>unknown</td>
 119 <td>mm9</td>
 120 <td>ELAND</td>
 121 <td>37</td>
 122 <td>'((FAILED_CHASTITY<=1))'</td>
 123 <td>0.6</td>
 124 <td>100</td>
 125 <td><a href="#Lane8">Lane 8</a></td>
 126 </tr>
 127 </table>
 128 <h2><br></br>Lane Results Summary<br></br></h2>
 129 <table border="1" cellpadding="5">
 130 <tr>
 131 <td colspan="2">Lane Info</td>
 132 <td colspan="8">Tile Mean +/- SD for Lane</td>
 133 </tr>
 134 <tr>
 135 <td>Lane </td>
 136 <td>Lane Yield (kbases) </td>
 137 <td>Clusters (raw)</td>
 138 <td>Clusters (PF) </td>
 139 <td>1st Cycle Int (PF) </td>
 140 <td>% intensity after 20 cycles (PF) </td>
 141 <td>% PF Clusters </td>
 142 <td>% Align (PF) </td>
 143 <td>Alignment Score (PF) </td>
 144 <td> % Error Rate (PF) </td>
 145 </tr>
 146 <tr>
 147 <td>1</td>
 148 <td>435340</td>
 149 <td>190220 +/- 15118</td>
 150 <td>117659 +/- 8144</td>
 151 <td>273 +/- 16</td>
 152 <td>80.02 +/- 2.52</td>
 153 <td>62.15 +/- 5.54</td>
 154 <td>77.18 +/- 0.22</td>
 155 <td>13447.28 +/- 43.35</td>
 156 <td>2.78 +/- 0.13</td>
 157 </tr>
 158 <tr>
 159 <td>2</td>
 160 <td>462364</td>
 161 <td>190560 +/- 14399</td>
 162 <td>124963 +/- 5687</td>
 163 <td>271 +/- 16</td>
 164 <td>75.73 +/- 2.46</td>
 165 <td>65.83 +/- 4.12</td>
 166 <td>70.06 +/- 0.39</td>
 167 <td>12082.95 +/- 64.81</td>
 168 <td>3.22 +/- 0.09</td>
 169 </tr>
 170 <tr>
 171 <td>3</td>
 172 <td>468929</td>
 173 <td>187597 +/- 12369</td>
 174 <td>126737 +/- 5549</td>
 175 <td>274 +/- 16</td>
 176 <td>72.61 +/- 2.67</td>
 177 <td>67.69 +/- 2.72</td>
 178 <td>74.03 +/- 0.22</td>
 179 <td>12470.18 +/- 50.02</td>
 180 <td>4.27 +/- 0.08</td>
 181 </tr>
 182 <tr>
 183 <td>4</td>
 184 <td>491642</td>
 185 <td>204142 +/- 16877</td>
 186 <td>132876 +/- 4023</td>
 187 <td>253 +/- 16</td>
 188 <td>80.43 +/- 3.10</td>
 189 <td>65.39 +/- 3.84</td>
 190 <td>72.95 +/- 0.15</td>
 191 <td>13273.80 +/- 39.75</td>
 192 <td>0.78 +/- 0.10</td>
 193 </tr>
 194 <tr>
 195 <td>5</td>
 196 <td>433033</td>
 197 <td>247308 +/- 11600</td>
 198 <td>117036 +/- 4489</td>
 199 <td>273 +/- 11</td>
 200 <td>68.60 +/- 2.40</td>
 201 <td>47.48 +/- 3.63</td>
 202 <td>66.91 +/- 0.54</td>
 203 <td>11700.08 +/- 66.33</td>
 204 <td>2.62 +/- 0.13</td>
 205 </tr>
 206 <tr>
 207 <td>6</td>
 208 <td>483012</td>
 209 <td>204298 +/- 15640</td>
 210 <td>130543 +/- 6972</td>
 211 <td>254 +/- 11</td>
 212 <td>81.35 +/- 1.96</td>
 213 <td>64.14 +/- 4.40</td>
 214 <td>77.28 +/- 0.11</td>
 215 <td>14084.01 +/- 23.09</td>
 216 <td>0.71 +/- 0.03</td>
 217 </tr>
 218 <tr>
 219 <td>7</td>
 220 <td>474325</td>
 221 <td>202707 +/- 15404</td>
 222 <td>128196 +/- 9745</td>
 223 <td>255 +/- 13</td>
 224 <td>79.95 +/- 2.08</td>
 225 <td>63.48 +/- 5.63</td>
 226 <td>75.78 +/- 0.18</td>
 227 <td>13758.74 +/- 60.86</td>
 228 <td>0.88 +/- 0.12</td>
 229 </tr>
 230 <tr>
 231 <td>8</td>
 232 <td>437372</td>
 233 <td>198075 +/- 14702</td>
 234 <td>118208 +/- 14798</td>
 235 <td>259 +/- 14</td>
 236 <td>81.80 +/- 2.53</td>
 237 <td>59.85 +/- 7.67</td>
 238 <td>74.55 +/- 0.36</td>
 239 <td>13586.07 +/- 103.97</td>
 240 <td>0.71 +/- 0.15</td>
 241 </tr>
 242 <tr><td colspan="13">Tile mean across chip</td></tr>
 243 <tr>
 244 <td>Av.</td>
 245 <td></td>
 246 <td>203113</td>
 247 <td>124527</td>
 248 <td>264</td>
 249 <td>77.56</td>
 250 <td>62.00</td>
 251 <td>73.59</td>
 252 <td>13050.39</td>
 253 <td>2.00</td>
 254 </tr>
 255 </table>
 256 <h2><br></br>Expanded Lane Summary<br></br></h2>
 257 <table border="1" cellpadding="5">
 258 <tr>
 259
 260 <tr><td colspan="2">Lane Info</td>
 261 <td colspan="2">Phasing Info</td>
 262 <td colspan="2">Raw Data (tile mean)</td>
 263 <td colspan="7">Filtered Data (tile mean)</td></tr>
 264 <td>Lane </td>
 265 <td>Clusters (tile mean) (raw)</td>
 266 <td>% Phasing </td>
 267 <td>% Prephasing </td>
 268 <td>% Error Rate (raw) </td>
 269 <td> Equiv Perfect Clusters (raw) </td>
 270 <td>% retained </td>
 271 <td>Cycle 2-4 Av Int (PF) </td>
 272 <td>Cycle 2-10 Av % Loss (PF) </td>
 273 <td>Cycle 10-20 Av % Loss (PF) </td>
 274 <td>% Align (PF) </td>
 275 <td>% Error Rate (PF) </td>
 276 <td> Equiv Perfect Clusters (PF) </td>
 277 </tr>
 278 <tr>
 279 <td>1</td>
 280 <td>190220</td>
 281 <td>0.6800</td>
 282 <td>0.2800</td>
 283 <td>3.17</td>
 284 <td>107262</td>
 285 <td>62.15</td>
 286 <td>241 +/- 13</td>
 287 <td>0.56 +/- 0.22</td>
 288 <td>0.29 +/- 0.14</td>
 289 <td>77.18</td>
 290 <td>2.78</td>
 291 <td>86184</td>
 292 </tr>
 293 <tr>
 294 <td>2</td>
 295 <td>190560</td>
 296 <td>0.6800</td>
 297 <td>0.2800</td>
 298 <td>3.53</td>
 299 <td>98678</td>
 300 <td>65.83</td>
 301 <td>238 +/- 14</td>
 302 <td>0.78 +/- 0.15</td>
 303 <td>0.53 +/- 0.15</td>
 304 <td>70.06</td>
 305 <td>3.22</td>
 306 <td>83090</td>
 307 </tr>
 308 <tr>
 309 <td>3</td>
 310 <td>187597</td>
 311 <td>0.6800</td>
 312 <td>0.2800</td>
 313 <td>4.44</td>
 314 <td>104008</td>
 315 <td>67.69</td>
 316 <td>233 +/- 14</td>
 317 <td>0.56 +/- 0.17</td>
 318 <td>0.59 +/- 0.26</td>
 319 <td>74.03</td>
 320 <td>4.27</td>
 321 <td>89278</td>
 322 </tr>
 323 <tr>
 324 <td>4</td>
 325 <td>204142</td>
 326 <td>0.6800</td>
 327 <td>0.2800</td>
 328 <td>1.38</td>
 329 <td>115765</td>
 330 <td>65.39</td>
 331 <td>239 +/- 14</td>
 332 <td>1.28 +/- 0.21</td>
 333 <td>0.77 +/- 0.21</td>
 334 <td>72.95</td>
 335 <td>0.78</td>
 336 <td>93475</td>
 337 </tr>
 338 <tr>
 339 <td>5</td>
 340 <td>247308</td>
 341 <td>0.6800</td>
 342 <td>0.2800</td>
 343 <td>3.40</td>
 344 <td>103006</td>
 345 <td>47.48</td>
 346 <td>242 +/- 10</td>
 347 <td>1.61 +/- 0.39</td>
 348 <td>1.21 +/- 0.21</td>
 349 <td>66.91</td>
 350 <td>2.62</td>
 351 <td>73768</td>
 352 </tr>
 353 <tr>
 354 <td>6</td>
 355 <td>204298</td>
 356 <td>0.6800</td>
 357 <td>0.2800</td>
 358 <td>1.33</td>
 359 <td>122233</td>
 360 <td>64.14</td>
 361 <td>242 +/- 12</td>
 362 <td>1.30 +/- 0.11</td>
 363 <td>0.73 +/- 0.22</td>
 364 <td>77.28</td>
 365 <td>0.71</td>
 366 <td>97646</td>
 367 </tr>
 368 <tr>
 369 <td>7</td>
 370 <td>202707</td>
 371 <td>0.6800</td>
 372 <td>0.2800</td>
 373 <td>1.51</td>
 374 <td>117513</td>
 375 <td>63.48</td>
 376 <td>238 +/- 13</td>
 377 <td>1.27 +/- 0.38</td>
 378 <td>0.66 +/- 0.22</td>
 379 <td>75.78</td>
 380 <td>0.88</td>
 381 <td>93659</td>
 382 </tr>
 383 <tr>
 384 <td>8</td>
 385 <td>198075</td>
 386 <td>0.6800</td>
 387 <td>0.2800</td>
 388 <td>1.41</td>
 389 <td>111115</td>
 390 <td>59.85</td>
 391 <td>244 +/- 12</td>
 392 <td>1.19 +/- 0.16</td>
 393 <td>0.65 +/- 0.29</td>
 394 <td>74.55</td>
 395 <td>0.71</td>
 396 <td>85327</td>
 397 </tr>
 398 </table>
 399 </body>
 400 </html>