flowcells = os.path.join(opts.sequence, 'flowcells')
extractor = CondorFastqExtract(opts.host, flowcells,
model=opts.model,
+ compression=opts.compression,
force=opts.force)
extractor.create_scripts(results)
parser.add_option('--force', default=False, action="store_true",
help="Force regenerating fastqs")
+ parser.add_option('--compression', default=None, type='choice',
+ choices=['gzip'],
+ help='select compression type for fastq files')
parser.add_option('--daf', default=None, help='specify daf name')
parser.add_option('--library-url', default=None,
help="specify an alternate source for library information")