results.make_tree_from(opts.make_tree_from)
if opts.fastq:
- extractor = CondorFastqExtract(opts.host, apidata, opts.sequence,
+ logger.info("Building fastq extraction scripts")
+ flowcells = os.path.join(opts.sequence, 'flowcells')
+ extractor = CondorFastqExtract(opts.host, flowcells,
+ model=opts.model,
force=opts.force)
extractor.create_scripts(results)
if opts.scan_submission:
+ if opts.name is None:
+ parser.error("Please define a submission name")
mapper.scan_submission_dirs(results)
if opts.make_soft: