i) Build QuEST
ii) NEED (TODO): Platform Version of BioProspector/genomebg
-iii) MACS installation
+iii) MACS installation. Make sure MACS is installed in your PATH, and it should be found automatically using "which macs"
iv) WingWong's Peak Caller (TODO: Need License)
+v) Primer3 must be installed in your PATH
Parameters:
my $root_dir = shift; (htswanalysis)