all: $(QPCR_FILES) $(PROFILE_FILES) $(CMPLX_FILES) $(PROFILE_IMAGES) $(PERCENT_BASE_IMAGES) $(COUNT_FILES) $(FILES) $(FLOWCELL)_qPCR_summary.txt $(FLOWCELL)_qPCR_summary.html $(FLOWCELL)_LibraryInfo.xml $(FLOWCELL)_SequencingSummary.html $(FLOWCELL)_QC_Summary.html
%.txt.complexity: %.txt
- $(ROOT_DIR)/bin/complexity_count `basename $<` $< > $@
+ $(EXPTRACK_DIR)/bin/complexity_count `basename $<` $< > $@
%.txt.count: %.txt
grep -v contam $< | awk '{if(NF > 3) {print $$1} }' | wc -l > $@;