Guess genome name for building compressed mapping counts from genomesize.xml

[htsworkflow.git] / htsworkflow / pipelines / runfolder.py

diff --git a/htsworkflow/pipelines/runfolder.py b/htsworkflow/pipelines/runfolder.py
index e857c3e6ae04a5ab044cac5c105d5b187e87eafc..baf115d8e3a6dd97f5fb137c945e71f1fd8fef62 100644 (file)
--- a/htsworkflow/pipelines/runfolder.py
+++ b/htsworkflow/pipelines/runfolder.py
@@ -211,7 +211,7 @@ def get_runs(runfolder, flowcell_id=None):
         for aligned in glob(aligned_glob):
             LOGGER.info("Found aligned directory %s" % (aligned,))
             try:
-                g = gerald.HiSeq(aligned)
+                g = gerald.gerald(aligned)
                 p = PipelineRun(runfolder, flowcell_id)
                 p.datadir = datadir
                 p.image_analysis = image_analysis