Guess genome name for building compressed mapping counts from genomesize.xml
authorDiane Trout <diane@caltech.edu>
Tue, 10 Jul 2012 21:13:46 +0000 (14:13 -0700)
committerDiane Trout <diane@caltech.edu>
Tue, 10 Jul 2012 21:13:46 +0000 (14:13 -0700)
commit1d5d5faa13018584e2cd57682bd03c1b9807b238
tree7787c19f8c7d216080e965c1cb14ab529048d6c1
parent1d0b93d4281b3b87b94be815a62d97e7eabd7c50
Guess genome name for building compressed mapping counts from genomesize.xml
The HiSeq pipeline creates a file that has the sizes of the genomes
that it mapped the particular project to, figuring out the genome
version from that is a lot easier than dealing with all the random
possible file names for the config files.

This patch is lacking in that I just hard coded a few genomes
I probably need some mechanism for pulling it from a database.
htsworkflow/pipelines/eland.py
htsworkflow/pipelines/gerald.py
htsworkflow/pipelines/runfolder.py