Initial port to python3

[htsworkflow.git] / htsworkflow / pipelines / srf2fastq.py

diff --git a/htsworkflow/pipelines/srf2fastq.py b/htsworkflow/pipelines/srf2fastq.py
index ab86342ce6d2108a95811cfb5f9a134f17affc6d..4000fa092277d644c83d7ab588eee58f61ae8b8b 100644 (file)
--- a/htsworkflow/pipelines/srf2fastq.py
+++ b/htsworkflow/pipelines/srf2fastq.py
@@ -7,7 +7,7 @@ from subprocess import Popen, PIPE
 import sys
 
 from htsworkflow.util.opener import autoopen
-from htsworkflow.version import version
+from htsworkflow.util.version import version
 
 LOGGER = logging.getLogger(__name__)
 
@@ -27,7 +27,7 @@ def main(cmdline=None):
         logging.basicConfig(level=logging.WARN)
 
     if opts.version:
-        print version()
+        print(version())
         return 0
 
     if len(args) != 1:
@@ -241,7 +241,7 @@ def foo():
     target2_name = base + '_r2.fastq'
 
     for target_name in [target1_name, target2_name]:
-        print 'target name', target_name
+        print('target name', target_name)
         if os.path.exists(target_name):
             raise RuntimeError("%s exists" % (target_name,))