class CondorFastqExtract(object):
def __init__(self, host, sequences_path,
log_path='log',
model=None,
class CondorFastqExtract(object):
def __init__(self, host, sequences_path,
log_path='log',
model=None,
apidata (dict): id & key to post to the server
sequences_path (str): root of the directory tree to scan for files
log_path (str): where to put condor log files
apidata (dict): id & key to post to the server
sequences_path (str): root of the directory tree to scan for files
log_path (str): where to put condor log files
force (bool): do we force overwriting current files?
"""
self.host = host
self.model = get_model(model)
self.sequences_path = sequences_path
self.log_path = log_path
force (bool): do we force overwriting current files?
"""
self.host = host
self.model = get_model(model)
self.sequences_path = sequences_path
self.log_path = log_path
self.force = force
LOGGER.info("CondorFastq host={0}".format(self.host))
LOGGER.info("CondorFastq sequences_path={0}".format(self.sequences_path))
LOGGER.info("CondorFastq log_path={0}".format(self.log_path))
self.force = force
LOGGER.info("CondorFastq host={0}".format(self.host))
LOGGER.info("CondorFastq sequences_path={0}".format(self.sequences_path))
LOGGER.info("CondorFastq log_path={0}".format(self.log_path))
return {
'pyscript': desplit_fastq.__file__,
'target': target_pathname,
return {
'pyscript': desplit_fastq.__file__,
'target': target_pathname,