Progress using rdf model to link fastqs with flowcell/lib metadata.

[htsworkflow.git] / htsworkflow / submission / daf.py

diff --git a/htsworkflow/submission/daf.py b/htsworkflow/submission/daf.py
index 09b285b095ee2a15cfabee5bc5de3d866522c4f9..f04ac8fe5328e738a012738a5d256b9307e11504 100644 (file)
--- a/htsworkflow/submission/daf.py
+++ b/htsworkflow/submission/daf.py
@@ -385,8 +385,8 @@ class UCSCSubmission(object):
     def create_file_attributes(self, filename, submissionView, submission_uri, submission_dir):
         # add file specific information
         LOGGER.debug("Updating file md5sum")
-        fileNode = RDF.Node(RDF.Uri(submission_uri + '/' + filename))
         submission_pathname = os.path.join(submission_dir, filename)
+        fileNode = RDF.Node(RDF.Uri("file://" + submission_pathname))
         self.model.add_statement(
             RDF.Statement(submissionView,
                           dafTermOntology['has_file'],