PREFIX ncbiTaxon: <http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=>
PREFIX geoSoft: <http://www.ncbi.nlm.nih.gov/geo/info/soft2.html#>
-select distinct ?filename, ?md5sum, ?file_type ?file_type_label
+select distinct ?filename, ?md5sum, ?file_type ?file_type_label ?flowcell_id ?read_length ?flowcell_type ?image_software ?image_version ?basecall_software ?basecall_version ?sequencer_model
WHERE {
<{{submission}}> ucscDaf:has_file ?file ;
a submissionOntology:submission .
?file ucscDaf:filename ?filename ;
ucscDaf:md5sum ?md5sum ;
+ libraryOntology:has_lane ?lane ;
a ?file_type .
?file_type a <{{file_class}}> ;
geoSoft:fileTypeLabel ?file_type_label .
+ OPTIONAL { ?lane libraryOntology:flowcell ?flowcell .
+ ?flowcell libraryOntology:flowcell_id ?flowcell_id ;
+ libraryOntology:read_length ?read_length ;
+ libraryOntology:flowcell_type ?flowcell_type ;
+ libraryOntology:image_software ?image_software ;
+ libraryOntology:image_version ?image_version ;
+ libraryOntology:basecall_software ?basecall_software ;
+ libraryOntology:basecall_version ?basecall_version ;
+ libraryOntology:sequenced_by ?sequencer .
+ ?sequencer libraryOntology:sequencer_model ?sequencer_model
+ }
}
\ No newline at end of file