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Initial port to python3
[htsworkflow.git]
/
htsworkflow
/
util
/
opener.py
diff --git
a/htsworkflow/util/opener.py
b/htsworkflow/util/opener.py
index 035bb24dabc9cc43d2f9ae10a3fe8562243230fd..ab83146d39604b1588301b7e016166721d889692 100644
(file)
--- a/
htsworkflow/util/opener.py
+++ b/
htsworkflow/util/opener.py
@@
-5,7
+5,7
@@
import os
import gzip
import bz2
import types
import gzip
import bz2
import types
-import urllib
2
+import urllib
.request, urllib.error, urllib.parse
def isfilelike(file_ref, mode):
"""Does file_ref have the core file operations?
def isfilelike(file_ref, mode):
"""Does file_ref have the core file operations?
@@
-47,7
+47,7
@@
def autoopen(file_ref, mode='r'):
elif isfilelike(file_ref, mode):
return file_ref
elif isurllike(file_ref, mode):
elif isfilelike(file_ref, mode):
return file_ref
elif isurllike(file_ref, mode):
- return urllib
2
.urlopen(file_ref)
+ return urllib
.request
.urlopen(file_ref)
elif os.path.splitext(file_ref)[1] == ".gz":
return gzip.open(file_ref, mode)
elif os.path.splitext(file_ref)[1] == '.bz2':
elif os.path.splitext(file_ref)[1] == ".gz":
return gzip.open(file_ref, mode)
elif os.path.splitext(file_ref)[1] == '.bz2':