Initial port to python3

[htsworkflow.git] / htsworkflow / util / test / test_validate.py

diff --git a/htsworkflow/util/test/test_validate.py b/htsworkflow/util/test/test_validate.py
index cc05f3c56641e645ccbabb8c5006f83c3b7168da..80fed82554fa2fb2ffb1da367a1d6155b7641256 100644 (file)
--- a/htsworkflow/util/test/test_validate.py
+++ b/htsworkflow/util/test/test_validate.py
@@ -1,58 +1,58 @@
 import os
-from StringIO import StringIO
-from unittest2 import TestCase
+from io import StringIO
+from unittest import TestCase
 
 from htsworkflow.util import validate
 
 class TestValidate(TestCase):
     def test_phred33_works(self):
-        q = StringIO(u"@ abc\nAGCT\n+\nBBBB\n")
+        q = StringIO("@ abc\nAGCT\n+\nBBBB\n")
         errors = validate.validate_fastq(q)
         self.failUnlessEqual(0, errors)
 
     def test_phred64_works(self):
-        q = StringIO(u"@ abc\nAGCT\n+\nfgh]\n")
+        q = StringIO("@ abc\nAGCT\n+\nfgh]\n")
         errors = validate.validate_fastq(q, 'phred64')
         self.failUnlessEqual(0, errors)
 
     def test_fasta_fails(self):
-        q = StringIO(u">abc\nAGCT\n>foo\nCGAT\n")
+        q = StringIO(">abc\nAGCT\n>foo\nCGAT\n")
         errors = validate.validate_fastq(q)
         self.failUnlessEqual(3, errors)
 
     def test_fastq_diff_length_uniform(self):
-        q = StringIO(u"@ abc\nAGCT\n+\nBBBB\n@ abcd\nAGCTT\n+\nJJJJJ\n")
+        q = StringIO("@ abc\nAGCT\n+\nBBBB\n@ abcd\nAGCTT\n+\nJJJJJ\n")
         errors = validate.validate_fastq(q, 'phred33', True)
         self.failUnlessEqual(2, errors)
 
     def test_fastq_diff_length_variable(self):
-        q = StringIO(u"@ abc\nAGCT\n+\n@@@@\n@ abcd\nAGCTT\n+\nJJJJJ\n")
+        q = StringIO("@ abc\nAGCT\n+\n@@@@\n@ abcd\nAGCTT\n+\nJJJJJ\n")
         errors = validate.validate_fastq(q, 'phred33', False)
         self.failUnlessEqual(0, errors)
 
     def test_fastq_qual_short(self):
-        q = StringIO(u"@ abc\nAGCT\n+\nJJ\n")
+        q = StringIO("@ abc\nAGCT\n+\nJJ\n")
         errors = validate.validate_fastq(q)
         self.failUnlessEqual(1, errors)
 
     def test_fastq_seq_invalid_char(self):
-        q = StringIO(u"@ abc\nAGC\u1310\n+\nEFGH\n")
+        q = StringIO("@ abc\nAGC\u1310\n+\nEFGH\n")
         errors = validate.validate_fastq(q)
         self.failUnlessEqual(1, errors)
 
     def test_fastq_qual_invalid_char(self):
-        q = StringIO(u"+ abc\nAGC.\n+\n!@#J\n")
+        q = StringIO("+ abc\nAGC.\n+\n!@#J\n")
         errors = validate.validate_fastq(q)
         self.failUnlessEqual(1, errors)
 
 
 def suite():
-    from unittest2 import TestSuite, defaultTestLoader
+    from unittest import TestSuite, defaultTestLoader
     suite = TestSuite()
     suite.addTests(defaultTestLoader.loadTestsFromTestCase(testValidate))
     return suite
 
 
 if __name__ == "__main__":
-    from unittest2 import main
+    from unittest import main
     main(defaultTest="suite")