parser.add_option('--raw-format', dest="raw_format", default='qseq',
choices=['qseq', 'srf'],
help='Specify which type of raw format to use. '
- 'Currently supported options: qseq, srf')
+ 'Currently supported options: qseq, srf, fastq')
parser.add_option('-u', '--use-run', dest='use_run', default=None,
help='Specify which run to use instead of autoscanning '
'the runfolder. You do this by providing the final '