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Update help message since we have a new type of file to archive
author
Diane Trout
<diane@caltech.edu>
Wed, 7 Mar 2012 00:05:42 +0000
(16:05 -0800)
committer
Diane Trout
<diane@caltech.edu>
Wed, 7 Mar 2012 00:05:42 +0000
(16:05 -0800)
scripts/htsw-runfolder
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diff --git
a/scripts/htsw-runfolder
b/scripts/htsw-runfolder
index 53bceeff47e920b5e9ddf2696272f7a17d2ec139..d4310b55b3a54885a865b92170d4059526e645f9 100755
(executable)
--- a/
scripts/htsw-runfolder
+++ b/
scripts/htsw-runfolder
@@
-176,7
+176,7
@@
def make_parser():
parser.add_option('--raw-format', dest="raw_format", default='qseq',
choices=['qseq', 'srf'],
help='Specify which type of raw format to use. '
- 'Currently supported options: qseq, srf')
+ 'Currently supported options: qseq, srf
, fastq
')
parser.add_option('-u', '--use-run', dest='use_run', default=None,
help='Specify which run to use instead of autoscanning '
'the runfolder. You do this by providing the final '