ran by the MPListener, at the end. Collects all important data from the pipeline...

ran by the MPListener, at the end. Collects all important data from the pipeline results, converts some formats, then runs some quality control programs (from QC script folder). Creates 2 folders CollectReads and QC. CollectReads's content is then all transfered to the analysis server where down stream analysis part is performed and other data handling stuff.