ran by the MPListener, at the end. Collects all important data from the pipeline...

diff --git a/htswdataprod/scripts/MPCollectData b/htswdataprod/scripts/MPCollectData
new file mode 100755 (executable)
index 0000000..479ff3b
--- /dev/null
+++ b/htswdataprod/scripts/MPCollectData
@@ -0,0 +1,35 @@
+#!/bin/sh                                                                                                                                                                                                    
+# Post Solexa Pipeline Data analysis
+
+#dir="$HOME/EXPTRACK";
+#exptrackmainsc="$HOME/EXPTRACK/exp_track_main.py"
+exptrackmainsc="exp_track_main.py"
+fcid=$1
+runfolder=$2
+
+# -------- FINISHED LISTENING TO SOLEXA DATA PROCESSING. START OUR DATA ANALYSIS PIPELINE ------------------------ #                                                                                                                   
+echo "Starting CollectReads ..."
+python $exptrackmainsc updsts $fcid $runfolder 4 Collecting_Reads
+CollectReads
+
+if [ -f ExpTrackLog/OK_CollectReads ]
+ then
+  echo "CollectReads successfuly finished.\n"
+  python $exptrackmainsc updsts $fcid $runfolder 5 Quality_Control
+  mkdir QC
+  #make -f ~/EXPTRACK/QC/Flowcell_QC_Makefile -j 8
+  make -f QC/Flowcell_QC_Makefile -j 8
+  
+  python $exptrackmainsc updsts $fcid $runfolder 5 Copying_Data
+  scp CollectReads/* ENCODE@171.65.76.194:~Data/Flowcells/DATA_FROM_HA
+
+  python $exptrackmainsc updsts $fcid $runfolder 5 DONE
+  echo "===== END ====="
+else
+  echo "FAILED: collect reads."
+  python $exptrackmainsc updsts $fcid $runfolder 4 CollectRead_Failed
+fi
+
+exit
+
+## ----------------------------------------------------