Use sample keys when looking up lane parameters.
authorDiane Trout <diane@caltech.edu>
Sat, 7 Jul 2012 00:34:27 +0000 (17:34 -0700)
committerDiane Trout <diane@caltech.edu>
Sat, 7 Jul 2012 00:34:27 +0000 (17:34 -0700)
commit1f6c3769677a102963402ebf0690ab9d39c1cf1f
treeb64014008d601271fd3b2da29e60bf0953442682
parent0ce512e26f0a39c9b86eefa9261ba6816d4acbc9
Use sample keys when looking up lane parameters.
And as a bonus feature I decided to test for a SampleKey incoming
and if its not convert the older lane number to a sample key internally.

One downside is since I'm storing not fully specified SampleKeys
I have to do a brute force lookup of the key.
htsworkflow/pipelines/eland.py
htsworkflow/pipelines/gerald.py
htsworkflow/pipelines/test/test_runfolder_rta1_12.py
htsworkflow/pipelines/test/testdata/1_12/aligned_config_1_12.xml