woldlab.caltech.edu Git - htsworkflow.git/commit

author	Diane Trout <diane@caltech.edu>
	Wed, 15 Oct 2008 18:59:34 +0000 (18:59 +0000)
committer	Diane Trout <diane@caltech.edu>
	Wed, 15 Oct 2008 18:59:34 +0000 (18:59 +0000)
commit	3a5137956b1a37068d4b235a0bbb12fd3c21c1d2
tree	d558c20cf7d27906c05d30ed3ab42968427582d8	tree \| snapshot
parent	657b881b83546c8197d57656871976efef90db41	commit \| diff

Rename trunk from gaworkflow to htsworkflow (and update all of the imports)
Fix the queuecommands test script to deal with the 1 sec delay hack

96 files changed:

gaworkflow/__init__.py	[deleted file]	blob \| history
gaworkflow/automation/__init__.py	[deleted file]	blob \| history
gaworkflow/automation/copier.py	[deleted file]	blob \| history
gaworkflow/automation/runner.py	[deleted file]	blob \| history
gaworkflow/automation/spoolwatcher.py	[deleted file]	blob \| history
gaworkflow/frontend/__init__.py	[deleted file]	blob \| history
gaworkflow/frontend/eland_config/__init__.py	[deleted file]	blob \| history
gaworkflow/frontend/eland_config/forms.py	[deleted file]	blob \| history
gaworkflow/frontend/eland_config/models.py	[deleted file]	blob \| history
gaworkflow/frontend/eland_config/urls.py	[deleted file]	blob \| history
gaworkflow/frontend/eland_config/views.py	[deleted file]	blob \| history
gaworkflow/frontend/fctracker/__init__.py	[deleted file]	blob \| history
gaworkflow/frontend/fctracker/models.py	[deleted file]	blob \| history
gaworkflow/frontend/fctracker/views.py	[deleted file]	blob \| history
gaworkflow/frontend/manage.py	[deleted file]	blob \| history
gaworkflow/frontend/settings.py	[deleted file]	blob \| history
gaworkflow/frontend/urls.py	[deleted file]	blob \| history
gaworkflow/pipeline/__init__.py	[deleted file]	blob \| history
gaworkflow/pipeline/bustard.py	[deleted file]	blob \| history
gaworkflow/pipeline/configure_run.py	[deleted file]	blob \| history
gaworkflow/pipeline/firecrest.py	[deleted file]	blob \| history
gaworkflow/pipeline/genome_mapper.py	[deleted file]	blob \| history
gaworkflow/pipeline/gerald.py	[deleted file]	blob \| history
gaworkflow/pipeline/recipe_parser.py	[deleted file]	blob \| history
gaworkflow/pipeline/retrieve_config.py	[deleted file]	blob \| history
gaworkflow/pipeline/run_status.py	[deleted file]	blob \| history
gaworkflow/pipeline/runfolder.py	[deleted file]	blob \| history
gaworkflow/pipeline/test/test_genome_mapper.py	[deleted file]	blob \| history
gaworkflow/pipeline/test/test_runfolder026.py	[deleted file]	blob \| history
gaworkflow/pipeline/test/test_runfolder030.py	[deleted file]	blob \| history
gaworkflow/util/__init__.py	[deleted file]	blob \| history
gaworkflow/util/alphanum.py	[deleted file]	blob \| history
gaworkflow/util/ethelp.py	[deleted file]	blob \| history
gaworkflow/util/fctracker.py	[deleted file]	blob \| history
gaworkflow/util/makebed.py	[deleted file]	blob \| history
gaworkflow/util/mount.py	[deleted file]	blob \| history
gaworkflow/util/opener.py	[deleted file]	blob \| history
gaworkflow/util/queuecommands.py	[deleted file]	blob \| history
gaworkflow/util/test/test_ethelp.py	[deleted file]	blob \| history
gaworkflow/util/test/test_makebed.py	[deleted file]	blob \| history
gaworkflow/util/test/test_queuecommands.py	[deleted file]	blob \| history
htsworkflow/__init__.py	[new file with mode: 0644]	blob
htsworkflow/automation/__init__.py	[new file with mode: 0644]	blob
htsworkflow/automation/copier.py	[new file with mode: 0644]	blob
htsworkflow/automation/runner.py	[new file with mode: 0644]	blob
htsworkflow/automation/spoolwatcher.py	[new file with mode: 0644]	blob
htsworkflow/frontend/__init__.py	[new file with mode: 0644]	blob
htsworkflow/frontend/eland_config/__init__.py	[new file with mode: 0644]	blob
htsworkflow/frontend/eland_config/forms.py	[new file with mode: 0644]	blob
htsworkflow/frontend/eland_config/models.py	[new file with mode: 0644]	blob
htsworkflow/frontend/eland_config/urls.py	[new file with mode: 0644]	blob
htsworkflow/frontend/eland_config/views.py	[new file with mode: 0644]	blob
htsworkflow/frontend/fctracker/__init__.py	[new file with mode: 0644]	blob
htsworkflow/frontend/fctracker/models.py	[new file with mode: 0644]	blob
htsworkflow/frontend/fctracker/views.py	[new file with mode: 0644]	blob
htsworkflow/frontend/manage.py	[new file with mode: 0644]	blob
htsworkflow/frontend/settings.py	[new file with mode: 0644]	blob
htsworkflow/frontend/urls.py	[new file with mode: 0644]	blob
htsworkflow/pipeline/__init__.py	[new file with mode: 0644]	blob
htsworkflow/pipeline/bustard.py	[new file with mode: 0644]	blob
htsworkflow/pipeline/configure_run.py	[new file with mode: 0644]	blob
htsworkflow/pipeline/firecrest.py	[new file with mode: 0644]	blob
htsworkflow/pipeline/genome_mapper.py	[new file with mode: 0644]	blob
htsworkflow/pipeline/gerald.py	[new file with mode: 0644]	blob
htsworkflow/pipeline/recipe_parser.py	[new file with mode: 0644]	blob
htsworkflow/pipeline/retrieve_config.py	[new file with mode: 0644]	blob
htsworkflow/pipeline/run_status.py	[new file with mode: 0644]	blob
htsworkflow/pipeline/runfolder.py	[new file with mode: 0644]	blob
htsworkflow/pipeline/test/test_genome_mapper.py	[new file with mode: 0644]	blob
htsworkflow/pipeline/test/test_runfolder026.py	[new file with mode: 0644]	blob
htsworkflow/pipeline/test/test_runfolder030.py	[new file with mode: 0644]	blob
htsworkflow/util/__init__.py	[new file with mode: 0644]	blob
htsworkflow/util/alphanum.py	[new file with mode: 0644]	blob
htsworkflow/util/ethelp.py	[new file with mode: 0644]	blob
htsworkflow/util/fctracker.py	[new file with mode: 0644]	blob
htsworkflow/util/makebed.py	[new file with mode: 0755]	blob
htsworkflow/util/mount.py	[new file with mode: 0644]	blob
htsworkflow/util/opener.py	[new file with mode: 0644]	blob
htsworkflow/util/queuecommands.py	[new file with mode: 0644]	blob
htsworkflow/util/test/test_ethelp.py	[new file with mode: 0644]	blob
htsworkflow/util/test/test_makebed.py	[new file with mode: 0644]	blob
htsworkflow/util/test/test_queuecommands.py	[new file with mode: 0644]	blob
scripts/configure_pipeline		diff \| blob \| history
scripts/copier		diff \| blob \| history
scripts/elandseq		diff \| blob \| history
scripts/gerald2bed.py		diff \| blob \| history
scripts/library.py		diff \| blob \| history
scripts/makebed		diff \| blob \| history
scripts/rerun_eland.py		diff \| blob \| history
scripts/retrieve_config		diff \| blob \| history
scripts/runfolder		diff \| blob \| history
scripts/runner		diff \| blob \| history
scripts/spoolwatcher		diff \| blob \| history
scripts/srf		diff \| blob \| history
setup.py		diff \| blob \| history
test/test_copier.py		diff \| blob \| history

htsworkflow sequencing LIMS software

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