Read the first sequence out of the fastq to find the read_length
authorDiane Trout <diane@caltech.edu>
Mon, 30 Nov 2015 21:47:33 +0000 (13:47 -0800)
committerDiane Trout <diane@caltech.edu>
Mon, 30 Nov 2015 21:47:33 +0000 (13:47 -0800)
commit8eb8a7e176bd3563533f5cdb59daf854a026e508
tree14c32bcf8bf59a7a5d2c01fc2f9579890e965e1b
parent65c4fae5836803a3f170fb6f5d9c26038bc20115
Read the first sequence out of the fastq to find the read_length

For some reason we had a flowcell where the sequencer thought
there were 66 cycles but the file only had 50.
htsworkflow/submission/submission.py