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2015-11-30	Diane Trout	Read the first sequence out of the fastq to find the...	commit \| commitdiff \| tree
2015-10-20	Diane Trout	this works better with python 3...	commit \| commitdiff \| tree
2015-10-20	Diane Trout	apparently json.dump can write to a stream	commit \| commitdiff \| tree
2015-10-20	Diane Trout	Add mode to connect to the DCC and make sure the files...	commit \| commitdiff \| tree
2015-09-24	Diane Trout	Return read_length for file properties	commit \| commitdiff \| tree
2015-09-23	Diane Trout	Use a re.split so we can accept both ', ' and ',' between...	commit \| commitdiff \| tree
2015-09-08	Diane Trout	indicate we want text not bytes	commit \| commitdiff \| tree
2015-09-08	Diane Trout	covert to using python3 config.get fallback=	commit \| commitdiff \| tree
2015-09-08	Diane Trout	convert from optparse to argparse	commit \| commitdiff \| tree
2015-09-08	Diane Trout	add some documentation -- shocking I know	commit \| commitdiff \| tree
2015-03-27	Diane Trout	Switch encode3 submitter to use aws.	commit \| commitdiff \| tree
2015-03-27	Diane Trout	Import flowcell details into the triple store from...	commit \| commitdiff \| tree
2015-03-27	Diane Trout	store flowcell name in the triple store if its known	commit \| commitdiff \| tree
2015-03-27	Diane Trout	record file size information for a file in the triple...	commit \| commitdiff \| tree
2015-03-27	Diane Trout	Adjust logging overrides and move django.setup to after...	commit \| commitdiff \| tree
2015-03-27	Diane Trout	getitem should only return the key	commit \| commitdiff \| tree
2015-03-27	Diane Trout	clean up a bit of whitespace	commit \| commitdiff \| tree
2014-12-13	Diane Trout	Merge branch 'django1.7' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2014-12-13	Diane Trout	Add document registration class.	commit \| commitdiff \| tree
2014-12-13	Diane Trout	add more type checking for parsing object type from...	commit \| commitdiff \| tree
2014-12-13	Diane Trout	add some helpful log messages	commit \| commitdiff \| tree
2014-10-27	Diane Trout	comment out benderjab dependency, as were not using...	commit \| commitdiff \| tree
2014-10-27	Diane Trout	Change the settings default to work with the two scoops...	commit \| commitdiff \| tree
2014-06-19	Diane Trout	Add fields list to a few ModelForms Meta class.	commit \| commitdiff \| tree
2014-06-19	Diane Trout	Rename get_query_set to get_queryset	commit \| commitdiff \| tree
2014-06-19	Diane Trout	Rename HttpResponse parameter mimetype to content_type	commit \| commitdiff \| tree
2014-06-19	Diane Trout	remove file created by typoing file name	commit \| commitdiff \| tree
2014-06-19	Diane Trout	Change unittest2 back into unittest.	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Directly generate compressed fastq files from HiSeq...	commit \| commitdiff \| tree
2014-06-10	Diane Trout	the filename templates were moved from condorfastq...	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Indicate when desplit_fastq didn't get any files to...	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Make sure we can load a run file that lacks alignment...	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Ignore the path when comparing filenames from the md5...	commit \| commitdiff \| tree
2014-01-22	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2014-01-22	Diane Trout	pass filters a string not an undefined variable	commit \| commitdiff \| tree
2013-12-23	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2013-12-23	Diane Trout	update settings for new location of WSGI_APPLICATION...	commit \| commitdiff \| tree
2013-12-23	Diane Trout	fix quote typos with the {% static %} template tag	commit \| commitdiff \| tree
2013-12-23	Diane Trout	Move wsgi into the actual project root.	commit \| commitdiff \| tree
2013-12-17	Diane Trout	Update WSGI_APPLICATION to point to the updated location...	commit \| commitdiff \| tree
2013-12-17	Diane Trout	Start simplyfing settings by using from settings_local...	commit \| commitdiff \| tree
2013-12-17	Diane Trout	add new wsgi.py driver	commit \| commitdiff \| tree
2013-12-17	Diane Trout	Update templates to consistently use {% static %} instead...	commit \| commitdiff \| tree
2013-12-17	Diane Trout	Move loading DTD into a function as the call caused...	commit \| commitdiff \| tree
2013-12-17	Diane Trout	move django imports around, change one function call...	commit \| commitdiff \| tree
2013-12-17	Diane Trout	Update exception caught for newer django?	commit \| commitdiff \| tree
2013-12-17	Diane Trout	use url function call for url definition instead of...	commit \| commitdiff \| tree
2013-12-17	Diane Trout	Move use of settings default into the function instead...	commit \| commitdiff \| tree
2013-12-10	Diane Trout	Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2013-12-09	Diane Trout	Add new paired library types to our hackish list for...	commit \| commitdiff \| tree
2013-12-06	Diane Trout	Attempt to be robust to not having an alignment in...	commit \| commitdiff \| tree
2013-12-06	Diane Trout	Attempt to be robust to not having an alignment in...	commit \| commitdiff \| tree
2013-12-05	Diane Trout	fix typo	commit \| commitdiff \| tree
2013-12-05	Diane Trout	fix typo	commit \| commitdiff \| tree
2013-12-05	Diane Trout	Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2013-12-05	Diane Trout	Recent IPAR xml config blocks include the runfolder...	commit \| commitdiff \| tree
2013-12-05	Diane Trout	Update for UCSC's validate manifest 1.7	commit \| commitdiff \| tree
2013-12-05	Diane Trout	Provide reporting of what command failed when bigWigInfo...	commit \| commitdiff \| tree
2013-12-05	Diane Trout	Recent IPAR xml config blocks include the runfolder...	commit \| commitdiff \| tree
2013-12-05	Diane Trout	Add a way to report what url was failing	commit \| commitdiff \| tree
2013-12-02	Diane Trout	Catch and report another class of exception	commit \| commitdiff \| tree
2013-10-21	Diane Trout	Pass additional information to the trackhub.	commit \| commitdiff \| tree
2013-10-17	Diane Trout	Add command line feature to srf command	commit \| commitdiff \| tree
2013-10-17	Diane Trout	Dynamically respond to the number of lanes.	commit \| commitdiff \| tree
2013-10-17	Diane Trout	Fix typo.	commit \| commitdiff \| tree
2013-10-17	Diane Trout	Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2013-10-11	Diane Trout	Make it possible to set a label on a track.	commit \| commitdiff \| tree
2013-10-09	Diane Trout	add replaces / replace_reason generation to trackhub...	commit \| commitdiff \| tree
2013-10-09	Diane Trout	remove spurious newline	commit \| commitdiff \| tree
2013-10-08	Diane Trout	Be more forgiving about the md5sum filename path	commit \| commitdiff \| tree
2013-10-08	Diane Trout	Add helpful logging information to explain missing...	commit \| commitdiff \| tree
2013-07-03	Diane Trout	Generate manifest files for ENCODE3	commit \| commitdiff \| tree
2013-07-01	Diane Trout	Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2013-07-01	Diane Trout	Add the option to copy tree in addition to making a...	commit \| commitdiff \| tree
2013-02-01	Diane Trout	Preliminary implementation of trackDb generation.	commit \| commitdiff \| tree
2013-02-01	Diane Trout	Forgot to import an exception I used	commit \| commitdiff \| tree
2013-02-01	Diane Trout	Make a sample key list to go along with our lane list	commit \| commitdiff \| tree
2013-01-16	Diane Trout	Support scanning HiSeq runs with multiple analyses.	commit \| commitdiff \| tree
2013-01-16	Diane Trout	Thrown an exception if we can't parse base calling...	commit \| commitdiff \| tree
2013-01-15	Diane Trout	Start making documentation for htsworkflow.	commit \| commitdiff \| tree
2013-01-09	Diane Trout	A better resolution to a possible circular dependency.	commit \| commitdiff \| tree
2013-01-09	Diane Trout	Don't accidentally transform an object into a tuple.	commit \| commitdiff \| tree
2013-01-08	Diane Trout	Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2013-01-08	Diane Trout	Try to make Aligned result directories optional in...	commit \| commitdiff \| tree
2013-01-08	Diane Trout	Add unaligned stats files to hiseq test case	commit \| commitdiff \| tree
2013-01-08	Diane Trout	Tweak timestamp format.	commit \| commitdiff \| tree
2012-12-14	Diane Trout	Gerald's time-stamp format was inconsistent.	commit \| commitdiff \| tree
2012-12-14	Diane Trout	Make my ChangeList sub-class compatibile with Django 1.3	commit \| commitdiff \| tree
2012-12-13	Diane Trout	Make the inventory pages work with the new HTSChangeList.	commit \| commitdiff \| tree
2012-12-13	Diane Trout	Django 1.4 requires the csrf token for posts.	commit \| commitdiff \| tree
2012-12-13	Diane Trout	Use specific time formatting instead of locale '%c'	commit \| commitdiff \| tree
2012-12-13	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2012-12-12	Diane Trout	Simplify linking fastq files to their library id.	commit \| commitdiff \| tree
2012-12-08	Diane Trout	Add a FastqName class to create and parse standardized...	commit \| commitdiff \| tree
2012-11-30	Diane Trout	Change my copied version of admin.changelist to a subclass.	commit \| commitdiff \| tree
2012-11-30	Diane Trout	The formatting for the model name changed.	commit \| commitdiff \| tree
2012-11-29	Diane Trout	Add a few more records for django db initial_data.json.	commit \| commitdiff \| tree
2012-11-29	Diane Trout	Use unittest2's module hooks for setting up the django...	commit \| commitdiff \| tree
2012-11-29	Diane Trout	Change csrf imports and database settings for django 1.4	commit \| commitdiff \| tree
2012-11-29	Diane Trout	Remove prints that were being called in test code.	commit \| commitdiff \| tree
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