Add a software (name) property to firecrest, ipar, bustard, gerald
authorDiane Trout <diane@caltech.edu>
Tue, 12 Jun 2012 00:03:49 +0000 (17:03 -0700)
committerDiane Trout <diane@caltech.edu>
Tue, 12 Jun 2012 00:03:49 +0000 (17:03 -0700)
commitd3aa48bae6192d21301697de54ed3febee5d31da
tree3689a4186224a33dc6972ac0d78145c972d74ef5
parentfa0043bebbe796e9ae1b7551a8abebf3068c6e7d
Add a software (name) property to firecrest, ipar, bustard, gerald
This property should return the proper illumina name for any
of their various software components I've been trying to capture.

NOTE: Now requires lxml.

I prefer the xpath searching api, and that's not in element tree.
so this now requires lxml.
15 files changed:
htsworkflow/pipelines/bustard.py
htsworkflow/pipelines/firecrest.py
htsworkflow/pipelines/gerald.py
htsworkflow/pipelines/ipar.py
htsworkflow/pipelines/runfolder.py
htsworkflow/pipelines/test/test_runfolder026.py
htsworkflow/pipelines/test/test_runfolder030.py
htsworkflow/pipelines/test/test_runfolder110.py
htsworkflow/pipelines/test/test_runfolder_casava_1_7.py
htsworkflow/pipelines/test/test_runfolder_ipar100.py
htsworkflow/pipelines/test/test_runfolder_ipar130.py
htsworkflow/pipelines/test/test_runfolder_pair.py
htsworkflow/pipelines/test/test_runfolder_rta160.py
htsworkflow/pipelines/test/test_runfolder_rta180.py
htsworkflow/pipelines/test/test_runfolder_rta1_12.py