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1ad7bb0
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Also include the read ID in the fastq header
author
Diane Trout
<diane@caltech.edu>
Tue, 1 Dec 2009 02:03:04 +0000
(
02:03
+0000)
committer
Diane Trout
<diane@caltech.edu>
Tue, 1 Dec 2009 02:03:04 +0000
(
02:03
+0000)
scripts/qseq2fastq
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diff --git
a/scripts/qseq2fastq
b/scripts/qseq2fastq
index 56589ee0c7d00322f03455aa5eb3de2df64c19f4..42628980d4f8b78809791ebd9bff1df92a3280c6 100644
(file)
--- a/
scripts/qseq2fastq
+++ b/
scripts/qseq2fastq
@@
-56,13
+56,14
@@
def qseq2fastq(destination, qseqs, trim=None):
pass_qc = record[10]
- destination.write('@%s_%s:%s:%s:%s:%s pf=%s%s' % ( \
+ destination.write('@%s_%s:%s:%s:%s:%s
/%s
pf=%s%s' % ( \
machine_name,
run_number,
lane_number,
tile,
x,
y,
+ read,
pass_qc,
os.linesep))
destination.write(sequence[trim])