Add the xmi file from umbrello documenting our basic pipeline usecase
authorDiane Trout <diane@caltech.edu>
Fri, 11 Jan 2008 23:43:41 +0000 (23:43 +0000)
committerDiane Trout <diane@caltech.edu>
Fri, 11 Jan 2008 23:43:41 +0000 (23:43 +0000)
docs/gaworkflow.xmi [new file with mode: 0644]

diff --git a/docs/gaworkflow.xmi b/docs/gaworkflow.xmi
new file mode 100644 (file)
index 0000000..41c227a
--- /dev/null
@@ -0,0 +1,452 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<XMI xmlns:UML="http://schema.omg.org/spec/UML/1.3" verified="false" timestamp="2008-01-11T15:30:52" xmi.version="1.2" >
+ <XMI.header>
+  <XMI.documentation>
+   <XMI.exporter>umbrello uml modeller http://uml.sf.net</XMI.exporter>
+   <XMI.exporterVersion>1.5.8</XMI.exporterVersion>
+   <XMI.exporterEncoding>UnicodeUTF8</XMI.exporterEncoding>
+  </XMI.documentation>
+  <XMI.metamodel xmi.name="UML" href="UML.xml" xmi.version="1.3" />
+ </XMI.header>
+ <XMI.content>
+  <UML:Model isSpecification="false" isLeaf="false" isRoot="false" xmi.id="m1" isAbstract="false" name="UML Model" >
+   <UML:Namespace.ownedElement>
+    <UML:Stereotype isSpecification="false" isLeaf="false" visibility="public" namespace="m1" xmi.id="folder" isRoot="false" isAbstract="false" name="folder" />
+    <UML:Stereotype isSpecification="false" isLeaf="false" visibility="public" namespace="m1" xmi.id="datatype" isRoot="false" isAbstract="false" name="datatype" />
+    <UML:Model stereotype="folder" isSpecification="false" isLeaf="false" visibility="public" namespace="m1" xmi.id="Logical View" isRoot="false" isAbstract="false" name="Logical View" >
+     <UML:Namespace.ownedElement>
+      <UML:Package stereotype="folder" isSpecification="false" isLeaf="false" visibility="public" namespace="Logical View" xmi.id="Datatypes" isRoot="false" isAbstract="false" name="Datatypes" >
+       <UML:Namespace.ownedElement>
+        <UML:DataType stereotype="datatype" isSpecification="false" isLeaf="false" visibility="public" namespace="Datatypes" xmi.id="zHGiO7QUZRiX" isRoot="false" isAbstract="false" name="int" />
+        <UML:DataType stereotype="datatype" isSpecification="false" isLeaf="false" visibility="public" namespace="Datatypes" xmi.id="LzF7NnxDIQZy" isRoot="false" isAbstract="false" name="char" />
+        <UML:DataType stereotype="datatype" isSpecification="false" isLeaf="false" visibility="public" namespace="Datatypes" xmi.id="rF1bLfYctE0z" isRoot="false" isAbstract="false" name="bool" />
+        <UML:DataType stereotype="datatype" isSpecification="false" isLeaf="false" visibility="public" namespace="Datatypes" xmi.id="eTY593cV1paM" isRoot="false" isAbstract="false" name="float" />
+        <UML:DataType stereotype="datatype" isSpecification="false" isLeaf="false" visibility="public" namespace="Datatypes" xmi.id="dYZty7spMrOf" isRoot="false" isAbstract="false" name="double" />
+        <UML:DataType stereotype="datatype" isSpecification="false" isLeaf="false" visibility="public" namespace="Datatypes" xmi.id="UuHO7GNlhtpq" isRoot="false" isAbstract="false" name="short" />
+        <UML:DataType stereotype="datatype" isSpecification="false" isLeaf="false" visibility="public" namespace="Datatypes" xmi.id="xPJyEuIpQpjO" isRoot="false" isAbstract="false" name="long" />
+        <UML:DataType stereotype="datatype" isSpecification="false" isLeaf="false" visibility="public" namespace="Datatypes" xmi.id="wZCGOYvqRDEY" isRoot="false" isAbstract="false" name="unsigned int" />
+        <UML:DataType stereotype="datatype" isSpecification="false" isLeaf="false" visibility="public" namespace="Datatypes" xmi.id="RZH8T4yOTGKi" isRoot="false" isAbstract="false" name="unsigned short" />
+        <UML:DataType stereotype="datatype" isSpecification="false" isLeaf="false" visibility="public" namespace="Datatypes" xmi.id="AcXaREwMl6c9" isRoot="false" isAbstract="false" name="unsigned long" />
+        <UML:DataType stereotype="datatype" isSpecification="false" isLeaf="false" visibility="public" namespace="Datatypes" xmi.id="dYy4jCaAkpGB" isRoot="false" isAbstract="false" name="string" />
+       </UML:Namespace.ownedElement>
+      </UML:Package>
+      <UML:Class isSpecification="false" isLeaf="false" visibility="public" namespace="Logical View" xmi.id="lZR99u8H0ec9" isRoot="false" isAbstract="false" name="SpoolWatcher" />
+      <UML:Class isSpecification="false" isLeaf="false" visibility="public" namespace="Logical View" xmi.id="GkJy5VAr2ZyC" isRoot="false" isAbstract="false" name="Copier" >
+       <UML:Classifier.feature>
+        <UML:Operation isSpecification="false" isLeaf="false" visibility="public" xmi.id="74kpdjSI8Fmc" isRoot="false" isAbstract="false" isQuery="false" name="startCopy" />
+        <UML:Operation isSpecification="false" isLeaf="false" visibility="public" xmi.id="ZEGJnJU2LB4i" isRoot="false" isAbstract="false" isQuery="false" name="sequencingFinished" >
+         <UML:BehavioralFeature.parameter>
+          <UML:Parameter isSpecification="false" visibility="private" xmi.id="0F6mtJp0LYow" value="" type="dYy4jCaAkpGB" name="runDir" />
+         </UML:BehavioralFeature.parameter>
+        </UML:Operation>
+       </UML:Classifier.feature>
+      </UML:Class>
+      <UML:Class isSpecification="false" isLeaf="false" visibility="public" namespace="Logical View" xmi.id="0UoIUrhibyff" isRoot="false" isAbstract="false" name="Runner" >
+       <UML:Classifier.feature>
+        <UML:Operation isSpecification="false" isLeaf="false" visibility="public" xmi.id="t3UPqTGoZoip" isRoot="false" isAbstract="false" isQuery="false" name="sequencingFinished" >
+         <UML:BehavioralFeature.parameter>
+          <UML:Parameter isSpecification="false" visibility="private" xmi.id="RRzKx8Z14iIF" value="" type="dYy4jCaAkpGB" name="runDir" />
+         </UML:BehavioralFeature.parameter>
+        </UML:Operation>
+        <UML:Operation isSpecification="false" isLeaf="false" visibility="public" xmi.id="4yuLbdrUeJtU" isRoot="false" isAbstract="false" isQuery="false" name="pipelineFinished" >
+         <UML:BehavioralFeature.parameter>
+          <UML:Parameter isSpecification="false" visibility="private" xmi.id="n7GKuy9LN9fK" value="" type="dYy4jCaAkpGB" name="runDir" />
+         </UML:BehavioralFeature.parameter>
+        </UML:Operation>
+       </UML:Classifier.feature>
+      </UML:Class>
+      <UML:Class isSpecification="false" isLeaf="false" visibility="public" namespace="Logical View" xmi.id="ZEsHfPFxkUD5" isRoot="false" isAbstract="false" name="Jumpgate" >
+       <UML:Classifier.feature>
+        <UML:Operation isSpecification="false" isLeaf="false" visibility="public" xmi.id="crYTwksc84xx" isRoot="false" isAbstract="false" isQuery="false" name="rsync" />
+       </UML:Classifier.feature>
+      </UML:Class>
+      <UML:Class isSpecification="false" isLeaf="false" visibility="public" namespace="Logical View" xmi.id="fOCNrWNOlFdQ" isRoot="false" isAbstract="false" name="Cellcenter" >
+       <UML:Classifier.feature>
+        <UML:Operation isSpecification="false" isLeaf="false" visibility="public" xmi.id="bKJKYukBj6Uz" isRoot="false" isAbstract="false" isQuery="false" name="configPipeline" />
+        <UML:Operation isSpecification="false" isLeaf="false" visibility="public" xmi.id="dtnBd3KDtsgp" isRoot="false" isAbstract="false" isQuery="false" name="runPipeline" />
+       </UML:Classifier.feature>
+      </UML:Class>
+      <UML:Association isSpecification="false" visibility="public" namespace="Logical View" xmi.id="YzXPgsx8JY4f" name="" >
+       <UML:Association.connection>
+        <UML:AssociationEnd isSpecification="false" visibility="public" changeability="changeable" isNavigable="false" xmi.id="Xd2ysTXicS6i" aggregation="none" type="wDCVwIFrhMaS" name="" />
+        <UML:AssociationEnd isSpecification="false" visibility="public" changeability="changeable" isNavigable="true" xmi.id="iqOSoVoV96r4" aggregation="none" type="aary2tTYpejI" name="" />
+       </UML:Association.connection>
+      </UML:Association>
+     </UML:Namespace.ownedElement>
+     <XMI.extension xmi.extender="umbrello" >
+      <diagrams>
+       <diagram snapgrid="0" showattsig="1" fillcolor="#ffffc0" linewidth="0" zoom="100" showgrid="0" showopsig="1" usefillcolor="1" snapx="10" canvaswidth="908" snapy="10" showatts="1" xmi.id="qsXVOiQh2k6g" documentation="" type="1" showops="1" showpackage="0" name="class diagram" localid="" showstereotype="0" showscope="1" snapcsgrid="0" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="#ff0000" canvasheight="598" >
+        <widgets/>
+        <messages/>
+        <associations/>
+       </diagram>
+       <diagram snapgrid="1" showattsig="1" fillcolor="#ffffc0" linewidth="0" zoom="100" showgrid="1" showopsig="1" usefillcolor="1" snapx="10" canvaswidth="908" snapy="10" showatts="1" xmi.id="ngoLeq2pOCZE" documentation="" type="3" showops="1" showpackage="0" name="Automation Messages" localid="dqOLIZOnXkGB" showstereotype="0" showscope="1" snapcsgrid="0" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="#ff0000" canvasheight="598" >
+        <widgets>
+         <objectwidget usesdiagramfillcolor="0" width="112" x="150" fillcolor="#ffffc0" y="50" instancename="" linewidth="none" height="28" usefillcolor="1" isinstance="0" xmi.id="lZR99u8H0ec9" decon="0" localid="5MaOitMlK05R" multipleinstance="0" drawasactor="0" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,1,0,0,0" linecolor="#ff0000" />
+         <objectwidget usesdiagramfillcolor="0" width="64" x="300" fillcolor="#ffffc0" y="50" instancename="" linewidth="none" height="28" usefillcolor="1" isinstance="0" xmi.id="GkJy5VAr2ZyC" decon="0" localid="R6RQi1ZnL9A3" multipleinstance="0" drawasactor="0" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,1,0,0,0" linecolor="#ff0000" />
+         <objectwidget usesdiagramfillcolor="0" width="68" x="420" fillcolor="#ffffc0" y="50" instancename="" linewidth="none" height="28" usefillcolor="1" isinstance="0" xmi.id="0UoIUrhibyff" decon="0" localid="RnWUKUelY3BH" multipleinstance="0" drawasactor="0" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,1,0,0,0" linecolor="#ff0000" />
+         <objectwidget usesdiagramfillcolor="0" width="84" x="40" fillcolor="#ffffc0" y="50" instancename="" linewidth="none" height="28" usefillcolor="1" isinstance="0" xmi.id="ZEsHfPFxkUD5" decon="0" localid="X0MTdrbPt7CP" multipleinstance="0" drawasactor="0" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,1,0,0,0" linecolor="#ff0000" />
+         <objectwidget usesdiagramfillcolor="0" width="88" x="550" fillcolor="#ffffc0" y="50" instancename="" linewidth="none" height="28" usefillcolor="1" isinstance="0" xmi.id="fOCNrWNOlFdQ" decon="0" localid="dqOLIZOnXkGB" multipleinstance="0" drawasactor="0" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,1,0,0,0" linecolor="#ff0000" />
+         <notewidget usesdiagramfillcolor="1" width="84" x="610" fillcolor="none" y="320" linewidth="none" height="50" usefillcolor="1" isinstance="0" xmi.id="yQmtlfQN4OB7" text="Other Analysis" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="none" />
+        </widgets>
+        <messages>
+         <messagewidget usesdiagramfillcolor="1" width="124" x="207" fillcolor="none" y="122" operation="74kpdjSI8Fmc" linewidth="none" widgetbid="R6RQi1ZnL9A3" height="8" usefillcolor="1" seqnum="" textid="nCbzGolht3FI" widgetaid="5MaOitMlK05R" isinstance="0" xmi.id="74kpdjSI8Fmc" sequencemessagetype="1001" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="none" >
+          <floatingtext usesdiagramfillcolor="1" width="89" x="210" fillcolor="none" y="100" linewidth="none" posttext="" role="704" height="22" usefillcolor="1" pretext="" isinstance="0" xmi.id="nCbzGolht3FI" text=": startCopy()" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="none" />
+         </messagewidget>
+         <messagewidget usesdiagramfillcolor="1" width="124" x="207" fillcolor="none" y="156" operation="74kpdjSI8Fmc" linewidth="none" widgetbid="R6RQi1ZnL9A3" height="8" usefillcolor="1" seqnum="" textid="6DI3dhqqGq64" widgetaid="5MaOitMlK05R" isinstance="0" xmi.id="74kpdjSI8Fmc" sequencemessagetype="1001" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="none" >
+          <floatingtext usesdiagramfillcolor="1" width="89" x="210" fillcolor="none" y="130" linewidth="none" posttext="" role="704" height="22" usefillcolor="1" pretext="" isinstance="0" xmi.id="6DI3dhqqGq64" text=": startCopy()" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="none" />
+         </messagewidget>
+         <messagewidget usesdiagramfillcolor="1" width="124" x="207" fillcolor="none" y="211" operation="74kpdjSI8Fmc" linewidth="none" widgetbid="R6RQi1ZnL9A3" height="8" usefillcolor="1" seqnum="" textid="HQIrp1PvEiws" widgetaid="5MaOitMlK05R" isinstance="0" xmi.id="74kpdjSI8Fmc" sequencemessagetype="1001" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="none" >
+          <floatingtext usesdiagramfillcolor="1" width="89" x="230" fillcolor="none" y="190" linewidth="none" posttext="" role="704" height="22" usefillcolor="1" pretext="" isinstance="0" xmi.id="HQIrp1PvEiws" text=": startCopy()" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="none" />
+         </messagewidget>
+         <messagewidget usesdiagramfillcolor="1" width="124" x="207" fillcolor="none" y="253" operation="ZEGJnJU2LB4i" linewidth="none" widgetbid="R6RQi1ZnL9A3" height="8" usefillcolor="1" seqnum="" textid="fVIZsE2zucZA" widgetaid="5MaOitMlK05R" isinstance="0" xmi.id="ZEGJnJU2LB4i" sequencemessagetype="1001" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="none" >
+          <floatingtext usesdiagramfillcolor="1" width="243" x="210" fillcolor="none" y="230" linewidth="none" posttext="" role="704" height="22" usefillcolor="1" pretext="" isinstance="0" xmi.id="fVIZsE2zucZA" text=": sequencingFinished(runDir : string)" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="none" />
+         </messagewidget>
+         <messagewidget usesdiagramfillcolor="1" width="120" x="333" fillcolor="none" y="282" operation="t3UPqTGoZoip" linewidth="none" widgetbid="RnWUKUelY3BH" height="8" usefillcolor="1" seqnum="" textid="uyOuUAqAf6hV" widgetaid="R6RQi1ZnL9A3" isinstance="0" xmi.id="t3UPqTGoZoip" sequencemessagetype="1001" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="none" >
+          <floatingtext usesdiagramfillcolor="1" width="243" x="340" fillcolor="none" y="260" linewidth="none" posttext="" role="704" height="22" usefillcolor="1" pretext="" isinstance="0" xmi.id="uyOuUAqAf6hV" text=": sequencingFinished(runDir : string)" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="none" />
+         </messagewidget>
+         <messagewidget usesdiagramfillcolor="1" width="258" x="74" fillcolor="none" y="243" operation="crYTwksc84xx" linewidth="none" widgetbid="X0MTdrbPt7CP" height="32" usefillcolor="1" seqnum="" textid="R4DtGIV3Lxs4" widgetaid="R6RQi1ZnL9A3" isinstance="0" xmi.id="crYTwksc84xx" sequencemessagetype="1000" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="none" >
+          <floatingtext usesdiagramfillcolor="1" width="61" x="80" fillcolor="none" y="220" linewidth="none" posttext="" role="704" height="22" usefillcolor="1" pretext="" isinstance="0" xmi.id="R4DtGIV3Lxs4" text=": rsync()" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="none" />
+         </messagewidget>
+         <messagewidget usesdiagramfillcolor="1" width="138" x="455" fillcolor="none" y="302" operation="bKJKYukBj6Uz" linewidth="none" widgetbid="dqOLIZOnXkGB" height="8" usefillcolor="1" seqnum="" textid="jD2f9bGadRRu" widgetaid="RnWUKUelY3BH" isinstance="0" xmi.id="bKJKYukBj6Uz" sequencemessagetype="1001" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="none" >
+          <floatingtext usesdiagramfillcolor="1" width="118" x="460" fillcolor="none" y="280" linewidth="none" posttext="" role="704" height="22" usefillcolor="1" pretext="" isinstance="0" xmi.id="jD2f9bGadRRu" text=": configPipeline()" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="none" />
+         </messagewidget>
+         <messagewidget usesdiagramfillcolor="1" width="138" x="455" fillcolor="none" y="330" operation="dtnBd3KDtsgp" linewidth="none" widgetbid="dqOLIZOnXkGB" height="8" usefillcolor="1" seqnum="" textid="oy8nMfs4rsj0" widgetaid="RnWUKUelY3BH" isinstance="0" xmi.id="dtnBd3KDtsgp" sequencemessagetype="1001" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="none" >
+          <floatingtext usesdiagramfillcolor="1" width="99" x="470" fillcolor="none" y="310" linewidth="none" posttext="" role="704" height="22" usefillcolor="1" pretext="" isinstance="0" xmi.id="oy8nMfs4rsj0" text=": runPipeline()" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="none" />
+         </messagewidget>
+         <messagewidget usesdiagramfillcolor="1" width="258" x="74" fillcolor="none" y="145" operation="crYTwksc84xx" linewidth="none" widgetbid="X0MTdrbPt7CP" height="32" usefillcolor="1" seqnum="" textid="VoaFYvDhgi96" widgetaid="R6RQi1ZnL9A3" isinstance="0" xmi.id="crYTwksc84xx" sequencemessagetype="1000" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="none" >
+          <floatingtext usesdiagramfillcolor="1" width="61" x="80" fillcolor="none" y="120" linewidth="none" posttext="" role="704" height="22" usefillcolor="1" pretext="" isinstance="0" xmi.id="VoaFYvDhgi96" text=": rsync()" usesdiagramusefillcolor="1" font="Sans Serif,8,-1,5,50,0,0,0,0,0" linecolor="none" />
+         </messagewidget>
+        </messages>
+        <associations/>
+       </diagram>
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