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Only configure logging if we're being run as a script
author
Diane Trout
<diane@caltech.edu>
Fri, 27 Feb 2009 01:01:02 +0000
(
01:01
+0000)
committer
Diane Trout
<diane@caltech.edu>
Fri, 27 Feb 2009 01:01:02 +0000
(
01:01
+0000)
scripts/configure_pipeline
patch
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diff --git
a/scripts/configure_pipeline
b/scripts/configure_pipeline
index 5e3e7fb6aca608539699695765e212e0f31ae49a..025133742dbf9a66568f2370fc43d39b3e266134 100644
(file)
--- a/
scripts/configure_pipeline
+++ b/
scripts/configure_pipeline
@@
-6,12
+6,6
@@
from htsworkflow.pipelines.configure_run import *
from htsworkflow.pipelines import retrieve_config as _rc
from htsworkflow.pipelines.run_status import startCmdLineStatusMonitor
from htsworkflow.pipelines import retrieve_config as _rc
from htsworkflow.pipelines.run_status import startCmdLineStatusMonitor
-logging.basicConfig(level=logging.DEBUG,
- format='%(asctime)s %(levelname)-8s %(message)s',
- datefmt='%a, %d %b %Y %H:%M:%S',
- #filename='pipeline_main.log',
- filemode='w')
-
s_fc = re.compile('FC[0-9]+')
#Turn on built-in command-line parsing.
s_fc = re.compile('FC[0-9]+')
#Turn on built-in command-line parsing.
@@
-85,4
+79,10
@@
def main(args=None):
return 2
if __name__ == "__main__":
return 2
if __name__ == "__main__":
+ logging.basicConfig(level=logging.DEBUG,
+ format='%(asctime)s %(levelname)-8s %(message)s',
+ datefmt='%a, %d %b %Y %H:%M:%S',
+ #filename='pipeline_main.log',
+ filemode='w')
+
sys.exit(main(sys.argv[1:]))
sys.exit(main(sys.argv[1:]))