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the filename templates were moved from condorfastq to fastqname a while ago
author
Diane Trout
<diane@caltech.edu>
Mon, 12 May 2014 23:14:18 +0000
(16:14 -0700)
committer
Diane Trout
<diane@ghic.org>
Tue, 10 Jun 2014 23:29:41 +0000
(16:29 -0700)
htsworkflow/submission/condorfastq.py
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diff --git
a/htsworkflow/submission/condorfastq.py
b/htsworkflow/submission/condorfastq.py
index ffbd8e0704356f4798d2dfb3790734bdcc782c9c..b6c22348f581f5148eeaa33cacfafe65f6ebc963 100644
(file)
--- a/
htsworkflow/submission/condorfastq.py
+++ b/
htsworkflow/submission/condorfastq.py
@@
-220,8
+220,6
@@
WHERE {
Also update model with link between illumina result files
and our target fastq file.
"""
Also update model with link between illumina result files
and our target fastq file.
"""
- fastq_paired_template = '%(lib_id)s_%(flowcell)s_c%(cycle)s_l%(lane)s_r%(read)s.fastq'
- fastq_single_template = '%(lib_id)s_%(flowcell)s_c%(cycle)s_l%(lane)s.fastq'
# find what targets we're missing
needed_targets = {}
for seq in raw_files:
# find what targets we're missing
needed_targets = {}
for seq in raw_files: