Initial conversion of HTSWorkflow to use south migrations.

diff --git a/htsworkflow/frontend/bcmagic/migrations/0001_initial.py b/htsworkflow/frontend/bcmagic/migrations/0001_initial.py
new file mode 100644 (file)
index 0000000..8d04e36
--- /dev/null
+++ b/htsworkflow/frontend/bcmagic/migrations/0001_initial.py
@@ -0,0 +1,63 @@
+# -*- coding: utf-8 -*-
+from south.utils import datetime_utils as datetime
+from south.db import db
+from south.v2 import SchemaMigration
+from django.db import models
+
+
+class Migration(SchemaMigration):
+
+    def forwards(self, orm):
+        # Adding model 'KeywordMap'
+        db.create_table(u'bcmagic_keywordmap', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('keyword', self.gf('django.db.models.fields.CharField')(max_length=64)),
+            ('regex', self.gf('django.db.models.fields.CharField')(max_length=1024)),
+            ('url_template', self.gf('django.db.models.fields.TextField')()),
+        ))
+        db.send_create_signal(u'bcmagic', ['KeywordMap'])
+
+        # Adding model 'Printer'
+        db.create_table(u'bcmagic_printer', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('name', self.gf('django.db.models.fields.CharField')(max_length=256)),
+            ('model', self.gf('django.db.models.fields.CharField')(max_length=64)),
+            ('ip_address', self.gf('django.db.models.fields.IPAddressField')(max_length=15)),
+            ('label_shape', self.gf('django.db.models.fields.CharField')(max_length=32)),
+            ('label_width', self.gf('django.db.models.fields.FloatField')()),
+            ('label_height', self.gf('django.db.models.fields.FloatField')()),
+            ('notes', self.gf('django.db.models.fields.TextField')()),
+        ))
+        db.send_create_signal(u'bcmagic', ['Printer'])
+
+
+    def backwards(self, orm):
+        # Deleting model 'KeywordMap'
+        db.delete_table(u'bcmagic_keywordmap')
+
+        # Deleting model 'Printer'
+        db.delete_table(u'bcmagic_printer')
+
+
+    models = {
+        u'bcmagic.keywordmap': {
+            'Meta': {'object_name': 'KeywordMap'},
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'keyword': ('django.db.models.fields.CharField', [], {'max_length': '64'}),
+            'regex': ('django.db.models.fields.CharField', [], {'max_length': '1024'}),
+            'url_template': ('django.db.models.fields.TextField', [], {})
+        },
+        u'bcmagic.printer': {
+            'Meta': {'object_name': 'Printer'},
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'ip_address': ('django.db.models.fields.IPAddressField', [], {'max_length': '15'}),
+            'label_height': ('django.db.models.fields.FloatField', [], {}),
+            'label_shape': ('django.db.models.fields.CharField', [], {'max_length': '32'}),
+            'label_width': ('django.db.models.fields.FloatField', [], {}),
+            'model': ('django.db.models.fields.CharField', [], {'max_length': '64'}),
+            'name': ('django.db.models.fields.CharField', [], {'max_length': '256'}),
+            'notes': ('django.db.models.fields.TextField', [], {})
+        }
+    }
+
+    complete_apps = ['bcmagic']
\ No newline at end of file

diff --git a/htsworkflow/frontend/bcmagic/migrations/__init__.py b/htsworkflow/frontend/bcmagic/migrations/__init__.py
new file mode 100644 (file)
index 0000000..e69de29

diff --git a/htsworkflow/frontend/experiments/migrations/0001_initial.py b/htsworkflow/frontend/experiments/migrations/0001_initial.py
new file mode 100644 (file)
index 0000000..971489d
--- /dev/null
+++ b/htsworkflow/frontend/experiments/migrations/0001_initial.py
@@ -0,0 +1,332 @@
+# -*- coding: utf-8 -*-
+from south.utils import datetime_utils as datetime
+from south.db import db
+from south.v2 import SchemaMigration
+from django.db import models
+
+
+class Migration(SchemaMigration):
+
+    def forwards(self, orm):
+        # Adding model 'ClusterStation'
+        db.create_table(u'experiments_clusterstation', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('name', self.gf('django.db.models.fields.CharField')(unique=True, max_length=50)),
+            ('isdefault', self.gf('django.db.models.fields.BooleanField')(default=False)),
+        ))
+        db.send_create_signal(u'experiments', ['ClusterStation'])
+
+        # Adding model 'Sequencer'
+        db.create_table(u'experiments_sequencer', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('name', self.gf('django.db.models.fields.CharField')(max_length=50, db_index=True)),
+            ('instrument_name', self.gf('django.db.models.fields.CharField')(max_length=50, db_index=True)),
+            ('serial_number', self.gf('django.db.models.fields.CharField')(max_length=50, db_index=True)),
+            ('model', self.gf('django.db.models.fields.CharField')(max_length=255)),
+            ('active', self.gf('django.db.models.fields.BooleanField')(default=True)),
+            ('isdefault', self.gf('django.db.models.fields.BooleanField')(default=False)),
+            ('comment', self.gf('django.db.models.fields.CharField')(max_length=255)),
+        ))
+        db.send_create_signal(u'experiments', ['Sequencer'])
+
+        # Adding model 'FlowCell'
+        db.create_table(u'experiments_flowcell', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('flowcell_id', self.gf('django.db.models.fields.CharField')(unique=True, max_length=20, db_index=True)),
+            ('run_date', self.gf('django.db.models.fields.DateTimeField')()),
+            ('advanced_run', self.gf('django.db.models.fields.BooleanField')(default=False)),
+            ('paired_end', self.gf('django.db.models.fields.BooleanField')(default=False)),
+            ('read_length', self.gf('django.db.models.fields.IntegerField')(default=32)),
+            ('control_lane', self.gf('django.db.models.fields.IntegerField')(null=True, blank=True)),
+            ('cluster_station', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['experiments.ClusterStation'])),
+            ('sequencer', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['experiments.Sequencer'])),
+            ('notes', self.gf('django.db.models.fields.TextField')(blank=True)),
+        ))
+        db.send_create_signal(u'experiments', ['FlowCell'])
+
+        # Adding model 'Lane'
+        db.create_table(u'experiments_lane', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('flowcell', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['experiments.FlowCell'])),
+            ('lane_number', self.gf('django.db.models.fields.IntegerField')()),
+            ('library', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['samples.Library'])),
+            ('pM', self.gf('django.db.models.fields.DecimalField')(default=5, max_digits=5, decimal_places=2)),
+            ('cluster_estimate', self.gf('django.db.models.fields.IntegerField')(null=True, blank=True)),
+            ('status', self.gf('django.db.models.fields.IntegerField')(null=True, blank=True)),
+            ('comment', self.gf('django.db.models.fields.TextField')(null=True, blank=True)),
+        ))
+        db.send_create_signal(u'experiments', ['Lane'])
+
+        # Adding model 'DataRun'
+        db.create_table(u'experiments_datarun', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('flowcell', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['experiments.FlowCell'])),
+            ('runfolder_name', self.gf('django.db.models.fields.CharField')(max_length=50)),
+            ('result_dir', self.gf('django.db.models.fields.CharField')(max_length=255)),
+            ('last_update_time', self.gf('django.db.models.fields.DateTimeField')()),
+            ('run_start_time', self.gf('django.db.models.fields.DateTimeField')()),
+            ('cycle_start', self.gf('django.db.models.fields.IntegerField')(null=True, blank=True)),
+            ('cycle_stop', self.gf('django.db.models.fields.IntegerField')(null=True, blank=True)),
+            ('run_status', self.gf('django.db.models.fields.IntegerField')(null=True, blank=True)),
+            ('image_software', self.gf('django.db.models.fields.CharField')(max_length=50)),
+            ('image_version', self.gf('django.db.models.fields.CharField')(max_length=50)),
+            ('basecall_software', self.gf('django.db.models.fields.CharField')(max_length=50)),
+            ('basecall_version', self.gf('django.db.models.fields.CharField')(max_length=50)),
+            ('alignment_software', self.gf('django.db.models.fields.CharField')(max_length=50)),
+            ('alignment_version', self.gf('django.db.models.fields.CharField')(max_length=50)),
+            ('comment', self.gf('django.db.models.fields.TextField')(blank=True)),
+        ))
+        db.send_create_signal(u'experiments', ['DataRun'])
+
+        # Adding model 'FileType'
+        db.create_table(u'experiments_filetype', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('name', self.gf('django.db.models.fields.CharField')(max_length=50)),
+            ('mimetype', self.gf('django.db.models.fields.CharField')(max_length=50, null=True, blank=True)),
+            ('regex', self.gf('django.db.models.fields.CharField')(max_length=50, null=True, blank=True)),
+        ))
+        db.send_create_signal(u'experiments', ['FileType'])
+
+        # Adding model 'DataFile'
+        db.create_table(u'experiments_datafile', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('random_key', self.gf('django.db.models.fields.CharField')(default='9ce3c20e-7fcc-11e3-9794-f0def16fbea3', max_length=64, db_index=True)),
+            ('data_run', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['experiments.DataRun'])),
+            ('library', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['samples.Library'], null=True, blank=True)),
+            ('file_type', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['experiments.FileType'])),
+            ('relative_pathname', self.gf('django.db.models.fields.CharField')(max_length=255, db_index=True)),
+        ))
+        db.send_create_signal(u'experiments', ['DataFile'])
+
+
+    def backwards(self, orm):
+        # Deleting model 'ClusterStation'
+        db.delete_table(u'experiments_clusterstation')
+
+        # Deleting model 'Sequencer'
+        db.delete_table(u'experiments_sequencer')
+
+        # Deleting model 'FlowCell'
+        db.delete_table(u'experiments_flowcell')
+
+        # Deleting model 'Lane'
+        db.delete_table(u'experiments_lane')
+
+        # Deleting model 'DataRun'
+        db.delete_table(u'experiments_datarun')
+
+        # Deleting model 'FileType'
+        db.delete_table(u'experiments_filetype')
+
+        # Deleting model 'DataFile'
+        db.delete_table(u'experiments_datafile')
+
+
+    models = {
+        u'auth.group': {
+            'Meta': {'object_name': 'Group'},
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '80'}),
+            'permissions': ('django.db.models.fields.related.ManyToManyField', [], {'to': u"orm['auth.Permission']", 'symmetrical': 'False', 'blank': 'True'})
+        },
+        u'auth.permission': {
+            'Meta': {'ordering': "(u'content_type__app_label', u'content_type__model', u'codename')", 'unique_together': "((u'content_type', u'codename'),)", 'object_name': 'Permission'},
+            'codename': ('django.db.models.fields.CharField', [], {'max_length': '100'}),
+            'content_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['contenttypes.ContentType']"}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'max_length': '50'})
+        },
+        u'auth.user': {
+            'Meta': {'object_name': 'User'},
+            'date_joined': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now'}),
+            'email': ('django.db.models.fields.EmailField', [], {'max_length': '75', 'blank': 'True'}),
+            'first_name': ('django.db.models.fields.CharField', [], {'max_length': '30', 'blank': 'True'}),
+            'groups': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'related_name': "u'user_set'", 'blank': 'True', 'to': u"orm['auth.Group']"}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'is_active': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),
+            'is_staff': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'is_superuser': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'last_login': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now'}),
+            'last_name': ('django.db.models.fields.CharField', [], {'max_length': '30', 'blank': 'True'}),
+            'password': ('django.db.models.fields.CharField', [], {'max_length': '128'}),
+            'user_permissions': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'related_name': "u'user_set'", 'blank': 'True', 'to': u"orm['auth.Permission']"}),
+            'username': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '30'})
+        },
+        u'contenttypes.contenttype': {
+            'Meta': {'ordering': "('name',)", 'unique_together': "(('app_label', 'model'),)", 'object_name': 'ContentType', 'db_table': "'django_content_type'"},
+            'app_label': ('django.db.models.fields.CharField', [], {'max_length': '100'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'model': ('django.db.models.fields.CharField', [], {'max_length': '100'}),
+            'name': ('django.db.models.fields.CharField', [], {'max_length': '100'})
+        },
+        u'experiments.clusterstation': {
+            'Meta': {'ordering': "['-isdefault', 'name']", 'object_name': 'ClusterStation'},
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'isdefault': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '50'})
+        },
+        u'experiments.datafile': {
+            'Meta': {'object_name': 'DataFile'},
+            'data_run': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.DataRun']"}),
+            'file_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.FileType']"}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'library': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Library']", 'null': 'True', 'blank': 'True'}),
+            'random_key': ('django.db.models.fields.CharField', [], {'default': "'9ce8579c-7fcc-11e3-9794-f0def16fbea3'", 'max_length': '64', 'db_index': 'True'}),
+            'relative_pathname': ('django.db.models.fields.CharField', [], {'max_length': '255', 'db_index': 'True'})
+        },
+        u'experiments.datarun': {
+            'Meta': {'object_name': 'DataRun'},
+            'alignment_software': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
+            'alignment_version': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
+            'basecall_software': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
+            'basecall_version': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
+            'comment': ('django.db.models.fields.TextField', [], {'blank': 'True'}),
+            'cycle_start': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
+            'cycle_stop': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
+            'flowcell': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.FlowCell']"}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'image_software': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
+            'image_version': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
+            'last_update_time': ('django.db.models.fields.DateTimeField', [], {}),
+            'result_dir': ('django.db.models.fields.CharField', [], {'max_length': '255'}),
+            'run_start_time': ('django.db.models.fields.DateTimeField', [], {}),
+            'run_status': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
+            'runfolder_name': ('django.db.models.fields.CharField', [], {'max_length': '50'})
+        },
+        u'experiments.filetype': {
+            'Meta': {'object_name': 'FileType'},
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'mimetype': ('django.db.models.fields.CharField', [], {'max_length': '50', 'null': 'True', 'blank': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
+            'regex': ('django.db.models.fields.CharField', [], {'max_length': '50', 'null': 'True', 'blank': 'True'})
+        },
+        u'experiments.flowcell': {
+            'Meta': {'ordering': "['-run_date']", 'object_name': 'FlowCell'},
+            'advanced_run': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'cluster_station': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.ClusterStation']"}),
+            'control_lane': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
+            'flowcell_id': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '20', 'db_index': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'notes': ('django.db.models.fields.TextField', [], {'blank': 'True'}),
+            'paired_end': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'read_length': ('django.db.models.fields.IntegerField', [], {'default': '32'}),
+            'run_date': ('django.db.models.fields.DateTimeField', [], {}),
+            'sequencer': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.Sequencer']"})
+        },
+        u'experiments.lane': {
+            'Meta': {'object_name': 'Lane'},
+            'cluster_estimate': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
+            'comment': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),
+            'flowcell': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.FlowCell']"}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'lane_number': ('django.db.models.fields.IntegerField', [], {}),
+            'library': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Library']"}),
+            'pM': ('django.db.models.fields.DecimalField', [], {'default': '5', 'max_digits': '5', 'decimal_places': '2'}),
+            'status': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'})
+        },
+        u'experiments.sequencer': {
+            'Meta': {'ordering': "['-isdefault', '-active', 'name']", 'object_name': 'Sequencer'},
+            'active': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),
+            'comment': ('django.db.models.fields.CharField', [], {'max_length': '255'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'instrument_name': ('django.db.models.fields.CharField', [], {'max_length': '50', 'db_index': 'True'}),
+            'isdefault': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'model': ('django.db.models.fields.CharField', [], {'max_length': '255'}),
+            'name': ('django.db.models.fields.CharField', [], {'max_length': '50', 'db_index': 'True'}),
+            'serial_number': ('django.db.models.fields.CharField', [], {'max_length': '50', 'db_index': 'True'})
+        },
+        u'samples.affiliation': {
+            'Meta': {'ordering': "['name', 'contact']", 'unique_together': "(('name', 'contact'),)", 'object_name': 'Affiliation'},
+            'contact': ('django.db.models.fields.CharField', [], {'max_length': '256', 'null': 'True', 'blank': 'True'}),
+            'email': ('django.db.models.fields.EmailField', [], {'max_length': '75', 'null': 'True', 'blank': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'max_length': '256', 'db_index': 'True'}),
+            'users': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'to': u"orm['samples.HTSUser']", 'null': 'True', 'blank': 'True'})
+        },
+        u'samples.antibody': {
+            'Meta': {'ordering': "['antigene']", 'object_name': 'Antibody'},
+            'antibodies': ('django.db.models.fields.CharField', [], {'max_length': '500', 'db_index': 'True'}),
+            'antigene': ('django.db.models.fields.CharField', [], {'max_length': '500', 'db_index': 'True'}),
+            'biology': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),
+            'catalog': ('django.db.models.fields.CharField', [], {'max_length': '50', 'null': 'True', 'blank': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'nickname': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '20', 'null': 'True', 'blank': 'True'}),
+            'notes': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),
+            'source': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '500', 'null': 'True', 'blank': 'True'})
+        },
+        u'samples.cellline': {
+            'Meta': {'ordering': "['cellline_name']", 'object_name': 'Cellline'},
+            'cellline_name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '100', 'db_index': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'nickname': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '20', 'null': 'True', 'blank': 'True'}),
+            'notes': ('django.db.models.fields.TextField', [], {'blank': 'True'})
+        },
+        u'samples.condition': {
+            'Meta': {'ordering': "['condition_name']", 'object_name': 'Condition'},
+            'condition_name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '2000', 'db_index': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'nickname': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '20', 'null': 'True', 'blank': 'True'}),
+            'notes': ('django.db.models.fields.TextField', [], {'blank': 'True'})
+        },
+        u'samples.experimenttype': {
+            'Meta': {'object_name': 'ExperimentType'},
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '50'})
+        },
+        u'samples.htsuser': {
+            'Meta': {'ordering': "['first_name', 'last_name', 'username']", 'object_name': 'HTSUser', '_ormbases': [u'auth.User']},
+            u'user_ptr': ('django.db.models.fields.related.OneToOneField', [], {'to': u"orm['auth.User']", 'unique': 'True', 'primary_key': 'True'})
+        },
+        u'samples.library': {
+            'Meta': {'ordering': "['-id']", 'object_name': 'Library'},
+            'account_number': ('django.db.models.fields.CharField', [], {'max_length': '100', 'null': 'True', 'blank': 'True'}),
+            'affiliations': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'related_name': "'library_affiliations'", 'null': 'True', 'to': u"orm['samples.Affiliation']"}),
+            'amplified_from_sample': ('django.db.models.fields.related.ForeignKey', [], {'blank': 'True', 'related_name': "'amplified_into_sample'", 'null': 'True', 'to': u"orm['samples.Library']"}),
+            'antibody': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Antibody']", 'null': 'True', 'blank': 'True'}),
+            'bioanalyzer_concentration': ('django.db.models.fields.DecimalField', [], {'null': 'True', 'max_digits': '5', 'decimal_places': '2', 'blank': 'True'}),
+            'bioanalyzer_image_url': ('django.db.models.fields.URLField', [], {'default': "''", 'max_length': '200', 'blank': 'True'}),
+            'bioanalyzer_summary': ('django.db.models.fields.TextField', [], {'default': "''", 'blank': 'True'}),
+            'cell_line': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Cellline']", 'null': 'True', 'blank': 'True'}),
+            'condition': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Condition']", 'null': 'True', 'blank': 'True'}),
+            'creation_date': ('django.db.models.fields.DateField', [], {'null': 'True', 'blank': 'True'}),
+            'experiment_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.ExperimentType']"}),
+            'gel_cut_size': ('django.db.models.fields.IntegerField', [], {'default': '225', 'null': 'True', 'blank': 'True'}),
+            'hidden': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'id': ('django.db.models.fields.CharField', [], {'max_length': '10', 'primary_key': 'True'}),
+            'insert_size': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
+            'library_name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '100'}),
+            'library_species': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Species']"}),
+            'library_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.LibraryType']", 'null': 'True', 'blank': 'True'}),
+            'made_by': ('django.db.models.fields.CharField', [], {'default': "'Lorian'", 'max_length': '50', 'blank': 'True'}),
+            'made_for': ('django.db.models.fields.CharField', [], {'max_length': '50', 'blank': 'True'}),
+            'multiplex_id': ('django.db.models.fields.CharField', [], {'max_length': '128', 'null': 'True', 'blank': 'True'}),
+            'notes': ('django.db.models.fields.TextField', [], {'blank': 'True'}),
+            'replicate': ('django.db.models.fields.PositiveSmallIntegerField', [], {'null': 'True', 'blank': 'True'}),
+            'stopping_point': ('django.db.models.fields.CharField', [], {'default': "'Done'", 'max_length': '25'}),
+            'successful_pM': ('django.db.models.fields.DecimalField', [], {'null': 'True', 'max_digits': '9', 'decimal_places': '1', 'blank': 'True'}),
+            'tags': ('django.db.models.fields.related.ManyToManyField', [], {'blank': 'True', 'related_name': "'library_tags'", 'null': 'True', 'symmetrical': 'False', 'to': u"orm['samples.Tag']"}),
+            'ten_nM_dilution': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'undiluted_concentration': ('django.db.models.fields.DecimalField', [], {'null': 'True', 'max_digits': '5', 'decimal_places': '2', 'blank': 'True'})
+        },
+        u'samples.librarytype': {
+            'Meta': {'ordering': "['-id']", 'object_name': 'LibraryType'},
+            'can_multiplex': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'is_paired_end': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '255'})
+        },
+        u'samples.species': {
+            'Meta': {'ordering': "['scientific_name']", 'object_name': 'Species'},
+            'common_name': ('django.db.models.fields.CharField', [], {'max_length': '256', 'blank': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'scientific_name': ('django.db.models.fields.CharField', [], {'max_length': '256', 'db_index': 'True'})
+        },
+        u'samples.tag': {
+            'Meta': {'ordering': "['context', 'tag_name']", 'object_name': 'Tag'},
+            'context': ('django.db.models.fields.CharField', [], {'default': "'Library'", 'max_length': '50'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'tag_name': ('django.db.models.fields.CharField', [], {'max_length': '100', 'db_index': 'True'})
+        }
+    }
+
+    complete_apps = ['experiments']
\ No newline at end of file

diff --git a/htsworkflow/frontend/experiments/migrations/__init__.py b/htsworkflow/frontend/experiments/migrations/__init__.py
new file mode 100644 (file)
index 0000000..e69de29

diff --git a/htsworkflow/frontend/inventory/migrations/0001_initial.py b/htsworkflow/frontend/inventory/migrations/0001_initial.py
new file mode 100644 (file)
index 0000000..ad0114d
--- /dev/null
+++ b/htsworkflow/frontend/inventory/migrations/0001_initial.py
@@ -0,0 +1,452 @@
+# -*- coding: utf-8 -*-
+from south.utils import datetime_utils as datetime
+from south.db import db
+from south.v2 import SchemaMigration
+from django.db import models
+
+
+class Migration(SchemaMigration):
+
+    def forwards(self, orm):
+        # Adding model 'Vendor'
+        db.create_table(u'inventory_vendor', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('name', self.gf('django.db.models.fields.CharField')(max_length=256)),
+            ('url', self.gf('django.db.models.fields.URLField')(max_length=200, null=True, blank=True)),
+        ))
+        db.send_create_signal(u'inventory', ['Vendor'])
+
+        # Adding model 'Location'
+        db.create_table(u'inventory_location', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('name', self.gf('django.db.models.fields.CharField')(unique=True, max_length=256)),
+            ('location_description', self.gf('django.db.models.fields.TextField')()),
+            ('uuid', self.gf('django.db.models.fields.CharField')(max_length=32, blank=True)),
+            ('notes', self.gf('django.db.models.fields.TextField')(null=True, blank=True)),
+        ))
+        db.send_create_signal(u'inventory', ['Location'])
+
+        # Adding model 'ItemInfo'
+        db.create_table(u'inventory_iteminfo', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('model_id', self.gf('django.db.models.fields.CharField')(max_length=256, null=True, blank=True)),
+            ('part_number', self.gf('django.db.models.fields.CharField')(max_length=256, null=True, blank=True)),
+            ('lot_number', self.gf('django.db.models.fields.CharField')(max_length=256, null=True, blank=True)),
+            ('url', self.gf('django.db.models.fields.URLField')(max_length=200, null=True, blank=True)),
+            ('qty_purchased', self.gf('django.db.models.fields.IntegerField')(default=1)),
+            ('vendor', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['inventory.Vendor'])),
+            ('purchase_date', self.gf('django.db.models.fields.DateField')(null=True, blank=True)),
+            ('warranty_months', self.gf('django.db.models.fields.IntegerField')(null=True, blank=True)),
+            ('notes', self.gf('django.db.models.fields.TextField')(null=True, blank=True)),
+        ))
+        db.send_create_signal(u'inventory', ['ItemInfo'])
+
+        # Adding model 'ItemType'
+        db.create_table(u'inventory_itemtype', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('name', self.gf('django.db.models.fields.CharField')(unique=True, max_length=64)),
+            ('description', self.gf('django.db.models.fields.TextField')(null=True, blank=True)),
+        ))
+        db.send_create_signal(u'inventory', ['ItemType'])
+
+        # Adding model 'ItemStatus'
+        db.create_table(u'inventory_itemstatus', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('name', self.gf('django.db.models.fields.CharField')(unique=True, max_length=64)),
+            ('notes', self.gf('django.db.models.fields.TextField')(null=True, blank=True)),
+        ))
+        db.send_create_signal(u'inventory', ['ItemStatus'])
+
+        # Adding model 'Item'
+        db.create_table(u'inventory_item', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('item_type', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['inventory.ItemType'])),
+            ('uuid', self.gf('django.db.models.fields.CharField')(unique=True, max_length=32, blank=True)),
+            ('barcode_id', self.gf('django.db.models.fields.CharField')(max_length=256, null=True, blank=True)),
+            ('force_use_uuid', self.gf('django.db.models.fields.BooleanField')(default=False)),
+            ('item_info', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['inventory.ItemInfo'])),
+            ('location', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['inventory.Location'])),
+            ('status', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['inventory.ItemStatus'], null=True, blank=True)),
+            ('creation_date', self.gf('django.db.models.fields.DateTimeField')(auto_now_add=True, blank=True)),
+            ('modified_date', self.gf('django.db.models.fields.DateTimeField')(auto_now=True, blank=True)),
+            ('notes', self.gf('django.db.models.fields.TextField')(null=True, blank=True)),
+        ))
+        db.send_create_signal(u'inventory', ['Item'])
+
+        # Adding model 'PrinterTemplate'
+        db.create_table(u'inventory_printertemplate', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('item_type', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['inventory.ItemType'])),
+            ('printer', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['bcmagic.Printer'])),
+            ('default', self.gf('django.db.models.fields.BooleanField')(default=False)),
+            ('template', self.gf('django.db.models.fields.TextField')()),
+        ))
+        db.send_create_signal(u'inventory', ['PrinterTemplate'])
+
+        # Adding model 'LongTermStorage'
+        db.create_table(u'inventory_longtermstorage', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('flowcell', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['experiments.FlowCell'])),
+            ('creation_date', self.gf('django.db.models.fields.DateTimeField')(auto_now_add=True, blank=True)),
+            ('modified_date', self.gf('django.db.models.fields.DateTimeField')(auto_now=True, blank=True)),
+        ))
+        db.send_create_signal(u'inventory', ['LongTermStorage'])
+
+        # Adding M2M table for field libraries on 'LongTermStorage'
+        m2m_table_name = db.shorten_name(u'inventory_longtermstorage_libraries')
+        db.create_table(m2m_table_name, (
+            ('id', models.AutoField(verbose_name='ID', primary_key=True, auto_created=True)),
+            ('longtermstorage', models.ForeignKey(orm[u'inventory.longtermstorage'], null=False)),
+            ('library', models.ForeignKey(orm[u'samples.library'], null=False))
+        ))
+        db.create_unique(m2m_table_name, ['longtermstorage_id', 'library_id'])
+
+        # Adding M2M table for field storage_devices on 'LongTermStorage'
+        m2m_table_name = db.shorten_name(u'inventory_longtermstorage_storage_devices')
+        db.create_table(m2m_table_name, (
+            ('id', models.AutoField(verbose_name='ID', primary_key=True, auto_created=True)),
+            ('longtermstorage', models.ForeignKey(orm[u'inventory.longtermstorage'], null=False)),
+            ('item', models.ForeignKey(orm[u'inventory.item'], null=False))
+        ))
+        db.create_unique(m2m_table_name, ['longtermstorage_id', 'item_id'])
+
+        # Adding model 'ReagentFlowcell'
+        db.create_table(u'inventory_reagentflowcell', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('creation_date', self.gf('django.db.models.fields.DateTimeField')(auto_now_add=True, blank=True)),
+            ('modified_date', self.gf('django.db.models.fields.DateTimeField')(auto_now=True, blank=True)),
+            ('flowcell', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['experiments.FlowCell'])),
+        ))
+        db.send_create_signal(u'inventory', ['ReagentFlowcell'])
+
+        # Adding M2M table for field reagent on 'ReagentFlowcell'
+        m2m_table_name = db.shorten_name(u'inventory_reagentflowcell_reagent')
+        db.create_table(m2m_table_name, (
+            ('id', models.AutoField(verbose_name='ID', primary_key=True, auto_created=True)),
+            ('reagentflowcell', models.ForeignKey(orm[u'inventory.reagentflowcell'], null=False)),
+            ('item', models.ForeignKey(orm[u'inventory.item'], null=False))
+        ))
+        db.create_unique(m2m_table_name, ['reagentflowcell_id', 'item_id'])
+
+        # Adding model 'ReagentLibrary'
+        db.create_table(u'inventory_reagentlibrary', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('creation_date', self.gf('django.db.models.fields.DateTimeField')(auto_now_add=True, blank=True)),
+            ('modified_date', self.gf('django.db.models.fields.DateTimeField')(auto_now=True, blank=True)),
+            ('library', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['samples.Library'])),
+        ))
+        db.send_create_signal(u'inventory', ['ReagentLibrary'])
+
+        # Adding M2M table for field reagent on 'ReagentLibrary'
+        m2m_table_name = db.shorten_name(u'inventory_reagentlibrary_reagent')
+        db.create_table(m2m_table_name, (
+            ('id', models.AutoField(verbose_name='ID', primary_key=True, auto_created=True)),
+            ('reagentlibrary', models.ForeignKey(orm[u'inventory.reagentlibrary'], null=False)),
+            ('item', models.ForeignKey(orm[u'inventory.item'], null=False))
+        ))
+        db.create_unique(m2m_table_name, ['reagentlibrary_id', 'item_id'])
+
+
+    def backwards(self, orm):
+        # Deleting model 'Vendor'
+        db.delete_table(u'inventory_vendor')
+
+        # Deleting model 'Location'
+        db.delete_table(u'inventory_location')
+
+        # Deleting model 'ItemInfo'
+        db.delete_table(u'inventory_iteminfo')
+
+        # Deleting model 'ItemType'
+        db.delete_table(u'inventory_itemtype')
+
+        # Deleting model 'ItemStatus'
+        db.delete_table(u'inventory_itemstatus')
+
+        # Deleting model 'Item'
+        db.delete_table(u'inventory_item')
+
+        # Deleting model 'PrinterTemplate'
+        db.delete_table(u'inventory_printertemplate')
+
+        # Deleting model 'LongTermStorage'
+        db.delete_table(u'inventory_longtermstorage')
+
+        # Removing M2M table for field libraries on 'LongTermStorage'
+        db.delete_table(db.shorten_name(u'inventory_longtermstorage_libraries'))
+
+        # Removing M2M table for field storage_devices on 'LongTermStorage'
+        db.delete_table(db.shorten_name(u'inventory_longtermstorage_storage_devices'))
+
+        # Deleting model 'ReagentFlowcell'
+        db.delete_table(u'inventory_reagentflowcell')
+
+        # Removing M2M table for field reagent on 'ReagentFlowcell'
+        db.delete_table(db.shorten_name(u'inventory_reagentflowcell_reagent'))
+
+        # Deleting model 'ReagentLibrary'
+        db.delete_table(u'inventory_reagentlibrary')
+
+        # Removing M2M table for field reagent on 'ReagentLibrary'
+        db.delete_table(db.shorten_name(u'inventory_reagentlibrary_reagent'))
+
+
+    models = {
+        u'auth.group': {
+            'Meta': {'object_name': 'Group'},
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '80'}),
+            'permissions': ('django.db.models.fields.related.ManyToManyField', [], {'to': u"orm['auth.Permission']", 'symmetrical': 'False', 'blank': 'True'})
+        },
+        u'auth.permission': {
+            'Meta': {'ordering': "(u'content_type__app_label', u'content_type__model', u'codename')", 'unique_together': "((u'content_type', u'codename'),)", 'object_name': 'Permission'},
+            'codename': ('django.db.models.fields.CharField', [], {'max_length': '100'}),
+            'content_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['contenttypes.ContentType']"}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'max_length': '50'})
+        },
+        u'auth.user': {
+            'Meta': {'object_name': 'User'},
+            'date_joined': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now'}),
+            'email': ('django.db.models.fields.EmailField', [], {'max_length': '75', 'blank': 'True'}),
+            'first_name': ('django.db.models.fields.CharField', [], {'max_length': '30', 'blank': 'True'}),
+            'groups': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'related_name': "u'user_set'", 'blank': 'True', 'to': u"orm['auth.Group']"}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'is_active': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),
+            'is_staff': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'is_superuser': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'last_login': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now'}),
+            'last_name': ('django.db.models.fields.CharField', [], {'max_length': '30', 'blank': 'True'}),
+            'password': ('django.db.models.fields.CharField', [], {'max_length': '128'}),
+            'user_permissions': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'related_name': "u'user_set'", 'blank': 'True', 'to': u"orm['auth.Permission']"}),
+            'username': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '30'})
+        },
+        u'bcmagic.printer': {
+            'Meta': {'object_name': 'Printer'},
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'ip_address': ('django.db.models.fields.IPAddressField', [], {'max_length': '15'}),
+            'label_height': ('django.db.models.fields.FloatField', [], {}),
+            'label_shape': ('django.db.models.fields.CharField', [], {'max_length': '32'}),
+            'label_width': ('django.db.models.fields.FloatField', [], {}),
+            'model': ('django.db.models.fields.CharField', [], {'max_length': '64'}),
+            'name': ('django.db.models.fields.CharField', [], {'max_length': '256'}),
+            'notes': ('django.db.models.fields.TextField', [], {})
+        },
+        u'contenttypes.contenttype': {
+            'Meta': {'ordering': "('name',)", 'unique_together': "(('app_label', 'model'),)", 'object_name': 'ContentType', 'db_table': "'django_content_type'"},
+            'app_label': ('django.db.models.fields.CharField', [], {'max_length': '100'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'model': ('django.db.models.fields.CharField', [], {'max_length': '100'}),
+            'name': ('django.db.models.fields.CharField', [], {'max_length': '100'})
+        },
+        u'experiments.clusterstation': {
+            'Meta': {'ordering': "['-isdefault', 'name']", 'object_name': 'ClusterStation'},
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'isdefault': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '50'})
+        },
+        u'experiments.flowcell': {
+            'Meta': {'ordering': "['-run_date']", 'object_name': 'FlowCell'},
+            'advanced_run': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'cluster_station': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.ClusterStation']"}),
+            'control_lane': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
+            'flowcell_id': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '20', 'db_index': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'notes': ('django.db.models.fields.TextField', [], {'blank': 'True'}),
+            'paired_end': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'read_length': ('django.db.models.fields.IntegerField', [], {'default': '32'}),
+            'run_date': ('django.db.models.fields.DateTimeField', [], {}),
+            'sequencer': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.Sequencer']"})
+        },
+        u'experiments.sequencer': {
+            'Meta': {'ordering': "['-isdefault', '-active', 'name']", 'object_name': 'Sequencer'},
+            'active': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),
+            'comment': ('django.db.models.fields.CharField', [], {'max_length': '255'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'instrument_name': ('django.db.models.fields.CharField', [], {'max_length': '50', 'db_index': 'True'}),
+            'isdefault': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'model': ('django.db.models.fields.CharField', [], {'max_length': '255'}),
+            'name': ('django.db.models.fields.CharField', [], {'max_length': '50', 'db_index': 'True'}),
+            'serial_number': ('django.db.models.fields.CharField', [], {'max_length': '50', 'db_index': 'True'})
+        },
+        u'inventory.item': {
+            'Meta': {'object_name': 'Item'},
+            'barcode_id': ('django.db.models.fields.CharField', [], {'max_length': '256', 'null': 'True', 'blank': 'True'}),
+            'creation_date': ('django.db.models.fields.DateTimeField', [], {'auto_now_add': 'True', 'blank': 'True'}),
+            'force_use_uuid': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'item_info': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['inventory.ItemInfo']"}),
+            'item_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['inventory.ItemType']"}),
+            'location': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['inventory.Location']"}),
+            'modified_date': ('django.db.models.fields.DateTimeField', [], {'auto_now': 'True', 'blank': 'True'}),
+            'notes': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),
+            'status': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['inventory.ItemStatus']", 'null': 'True', 'blank': 'True'}),
+            'uuid': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '32', 'blank': 'True'})
+        },
+        u'inventory.iteminfo': {
+            'Meta': {'object_name': 'ItemInfo'},
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'lot_number': ('django.db.models.fields.CharField', [], {'max_length': '256', 'null': 'True', 'blank': 'True'}),
+            'model_id': ('django.db.models.fields.CharField', [], {'max_length': '256', 'null': 'True', 'blank': 'True'}),
+            'notes': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),
+            'part_number': ('django.db.models.fields.CharField', [], {'max_length': '256', 'null': 'True', 'blank': 'True'}),
+            'purchase_date': ('django.db.models.fields.DateField', [], {'null': 'True', 'blank': 'True'}),
+            'qty_purchased': ('django.db.models.fields.IntegerField', [], {'default': '1'}),
+            'url': ('django.db.models.fields.URLField', [], {'max_length': '200', 'null': 'True', 'blank': 'True'}),
+            'vendor': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['inventory.Vendor']"}),
+            'warranty_months': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'})
+        },
+        u'inventory.itemstatus': {
+            'Meta': {'object_name': 'ItemStatus'},
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '64'}),
+            'notes': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'})
+        },
+        u'inventory.itemtype': {
+            'Meta': {'object_name': 'ItemType'},
+            'description': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '64'})
+        },
+        u'inventory.location': {
+            'Meta': {'object_name': 'Location'},
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'location_description': ('django.db.models.fields.TextField', [], {}),
+            'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '256'}),
+            'notes': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),
+            'uuid': ('django.db.models.fields.CharField', [], {'max_length': '32', 'blank': 'True'})
+        },
+        u'inventory.longtermstorage': {
+            'Meta': {'object_name': 'LongTermStorage'},
+            'creation_date': ('django.db.models.fields.DateTimeField', [], {'auto_now_add': 'True', 'blank': 'True'}),
+            'flowcell': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.FlowCell']"}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'libraries': ('django.db.models.fields.related.ManyToManyField', [], {'to': u"orm['samples.Library']", 'symmetrical': 'False'}),
+            'modified_date': ('django.db.models.fields.DateTimeField', [], {'auto_now': 'True', 'blank': 'True'}),
+            'storage_devices': ('django.db.models.fields.related.ManyToManyField', [], {'to': u"orm['inventory.Item']", 'symmetrical': 'False'})
+        },
+        u'inventory.printertemplate': {
+            'Meta': {'object_name': 'PrinterTemplate'},
+            'default': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'item_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['inventory.ItemType']"}),
+            'printer': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['bcmagic.Printer']"}),
+            'template': ('django.db.models.fields.TextField', [], {})
+        },
+        u'inventory.reagentflowcell': {
+            'Meta': {'object_name': 'ReagentFlowcell'},
+            'creation_date': ('django.db.models.fields.DateTimeField', [], {'auto_now_add': 'True', 'blank': 'True'}),
+            'flowcell': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.FlowCell']"}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'modified_date': ('django.db.models.fields.DateTimeField', [], {'auto_now': 'True', 'blank': 'True'}),
+            'reagent': ('django.db.models.fields.related.ManyToManyField', [], {'to': u"orm['inventory.Item']", 'symmetrical': 'False'})
+        },
+        u'inventory.reagentlibrary': {
+            'Meta': {'object_name': 'ReagentLibrary'},
+            'creation_date': ('django.db.models.fields.DateTimeField', [], {'auto_now_add': 'True', 'blank': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'library': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Library']"}),
+            'modified_date': ('django.db.models.fields.DateTimeField', [], {'auto_now': 'True', 'blank': 'True'}),
+            'reagent': ('django.db.models.fields.related.ManyToManyField', [], {'to': u"orm['inventory.Item']", 'symmetrical': 'False'})
+        },
+        u'inventory.vendor': {
+            'Meta': {'object_name': 'Vendor'},
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'max_length': '256'}),
+            'url': ('django.db.models.fields.URLField', [], {'max_length': '200', 'null': 'True', 'blank': 'True'})
+        },
+        u'samples.affiliation': {
+            'Meta': {'ordering': "['name', 'contact']", 'unique_together': "(('name', 'contact'),)", 'object_name': 'Affiliation'},
+            'contact': ('django.db.models.fields.CharField', [], {'max_length': '256', 'null': 'True', 'blank': 'True'}),
+            'email': ('django.db.models.fields.EmailField', [], {'max_length': '75', 'null': 'True', 'blank': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'max_length': '256', 'db_index': 'True'}),
+            'users': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'to': u"orm['samples.HTSUser']", 'null': 'True', 'blank': 'True'})
+        },
+        u'samples.antibody': {
+            'Meta': {'ordering': "['antigene']", 'object_name': 'Antibody'},
+            'antibodies': ('django.db.models.fields.CharField', [], {'max_length': '500', 'db_index': 'True'}),
+            'antigene': ('django.db.models.fields.CharField', [], {'max_length': '500', 'db_index': 'True'}),
+            'biology': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),
+            'catalog': ('django.db.models.fields.CharField', [], {'max_length': '50', 'null': 'True', 'blank': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'nickname': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '20', 'null': 'True', 'blank': 'True'}),
+            'notes': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),
+            'source': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '500', 'null': 'True', 'blank': 'True'})
+        },
+        u'samples.cellline': {
+            'Meta': {'ordering': "['cellline_name']", 'object_name': 'Cellline'},
+            'cellline_name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '100', 'db_index': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'nickname': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '20', 'null': 'True', 'blank': 'True'}),
+            'notes': ('django.db.models.fields.TextField', [], {'blank': 'True'})
+        },
+        u'samples.condition': {
+            'Meta': {'ordering': "['condition_name']", 'object_name': 'Condition'},
+            'condition_name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '2000', 'db_index': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'nickname': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '20', 'null': 'True', 'blank': 'True'}),
+            'notes': ('django.db.models.fields.TextField', [], {'blank': 'True'})
+        },
+        u'samples.experimenttype': {
+            'Meta': {'object_name': 'ExperimentType'},
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '50'})
+        },
+        u'samples.htsuser': {
+            'Meta': {'ordering': "['first_name', 'last_name', 'username']", 'object_name': 'HTSUser', '_ormbases': [u'auth.User']},
+            u'user_ptr': ('django.db.models.fields.related.OneToOneField', [], {'to': u"orm['auth.User']", 'unique': 'True', 'primary_key': 'True'})
+        },
+        u'samples.library': {
+            'Meta': {'ordering': "['-id']", 'object_name': 'Library'},
+            'account_number': ('django.db.models.fields.CharField', [], {'max_length': '100', 'null': 'True', 'blank': 'True'}),
+            'affiliations': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'related_name': "'library_affiliations'", 'null': 'True', 'to': u"orm['samples.Affiliation']"}),
+            'amplified_from_sample': ('django.db.models.fields.related.ForeignKey', [], {'blank': 'True', 'related_name': "'amplified_into_sample'", 'null': 'True', 'to': u"orm['samples.Library']"}),
+            'antibody': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Antibody']", 'null': 'True', 'blank': 'True'}),
+            'bioanalyzer_concentration': ('django.db.models.fields.DecimalField', [], {'null': 'True', 'max_digits': '5', 'decimal_places': '2', 'blank': 'True'}),
+            'bioanalyzer_image_url': ('django.db.models.fields.URLField', [], {'default': "''", 'max_length': '200', 'blank': 'True'}),
+            'bioanalyzer_summary': ('django.db.models.fields.TextField', [], {'default': "''", 'blank': 'True'}),
+            'cell_line': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Cellline']", 'null': 'True', 'blank': 'True'}),
+            'condition': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Condition']", 'null': 'True', 'blank': 'True'}),
+            'creation_date': ('django.db.models.fields.DateField', [], {'null': 'True', 'blank': 'True'}),
+            'experiment_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.ExperimentType']"}),
+            'gel_cut_size': ('django.db.models.fields.IntegerField', [], {'default': '225', 'null': 'True', 'blank': 'True'}),
+            'hidden': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'id': ('django.db.models.fields.CharField', [], {'max_length': '10', 'primary_key': 'True'}),
+            'insert_size': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
+            'library_name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '100'}),
+            'library_species': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Species']"}),
+            'library_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.LibraryType']", 'null': 'True', 'blank': 'True'}),
+            'made_by': ('django.db.models.fields.CharField', [], {'default': "'Lorian'", 'max_length': '50', 'blank': 'True'}),
+            'made_for': ('django.db.models.fields.CharField', [], {'max_length': '50', 'blank': 'True'}),
+            'multiplex_id': ('django.db.models.fields.CharField', [], {'max_length': '128', 'null': 'True', 'blank': 'True'}),
+            'notes': ('django.db.models.fields.TextField', [], {'blank': 'True'}),
+            'replicate': ('django.db.models.fields.PositiveSmallIntegerField', [], {'null': 'True', 'blank': 'True'}),
+            'stopping_point': ('django.db.models.fields.CharField', [], {'default': "'Done'", 'max_length': '25'}),
+            'successful_pM': ('django.db.models.fields.DecimalField', [], {'null': 'True', 'max_digits': '9', 'decimal_places': '1', 'blank': 'True'}),
+            'tags': ('django.db.models.fields.related.ManyToManyField', [], {'blank': 'True', 'related_name': "'library_tags'", 'null': 'True', 'symmetrical': 'False', 'to': u"orm['samples.Tag']"}),
+            'ten_nM_dilution': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'undiluted_concentration': ('django.db.models.fields.DecimalField', [], {'null': 'True', 'max_digits': '5', 'decimal_places': '2', 'blank': 'True'})
+        },
+        u'samples.librarytype': {
+            'Meta': {'ordering': "['-id']", 'object_name': 'LibraryType'},
+            'can_multiplex': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'is_paired_end': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '255'})
+        },
+        u'samples.species': {
+            'Meta': {'ordering': "['scientific_name']", 'object_name': 'Species'},
+            'common_name': ('django.db.models.fields.CharField', [], {'max_length': '256', 'blank': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'scientific_name': ('django.db.models.fields.CharField', [], {'max_length': '256', 'db_index': 'True'})
+        },
+        u'samples.tag': {
+            'Meta': {'ordering': "['context', 'tag_name']", 'object_name': 'Tag'},
+            'context': ('django.db.models.fields.CharField', [], {'default': "'Library'", 'max_length': '50'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'tag_name': ('django.db.models.fields.CharField', [], {'max_length': '100', 'db_index': 'True'})
+        }
+    }
+
+    complete_apps = ['inventory']
\ No newline at end of file

diff --git a/htsworkflow/frontend/inventory/migrations/__init__.py b/htsworkflow/frontend/inventory/migrations/__init__.py
new file mode 100644 (file)
index 0000000..e69de29

diff --git a/htsworkflow/frontend/labels/migrations/0001_initial.py b/htsworkflow/frontend/labels/migrations/0001_initial.py
new file mode 100644 (file)
index 0000000..238b966
--- /dev/null
+++ b/htsworkflow/frontend/labels/migrations/0001_initial.py
@@ -0,0 +1,86 @@
+# -*- coding: utf-8 -*-
+from south.utils import datetime_utils as datetime
+from south.db import db
+from south.v2 import SchemaMigration
+from django.db import models
+
+
+class Migration(SchemaMigration):
+
+    def forwards(self, orm):
+        # Adding model 'LabelPrinter'
+        db.create_table(u'labels_labelprinter', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('name', self.gf('django.db.models.fields.CharField')(max_length=256)),
+            ('model', self.gf('django.db.models.fields.CharField')(default='ZM400', max_length=64)),
+            ('ip_address', self.gf('django.db.models.fields.IPAddressField')(max_length=15)),
+            ('labels', self.gf('django.db.models.fields.CharField')(max_length=200)),
+            ('notes', self.gf('django.db.models.fields.TextField')(null=True, blank=True)),
+        ))
+        db.send_create_signal(u'labels', ['LabelPrinter'])
+
+        # Adding model 'LabelTemplate'
+        db.create_table(u'labels_labeltemplate', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('name', self.gf('django.db.models.fields.CharField')(max_length=200)),
+            ('description', self.gf('django.db.models.fields.TextField')(null=True, blank=True)),
+            ('printer', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['labels.LabelPrinter'])),
+            ('ZPL_code', self.gf('django.db.models.fields.TextField')()),
+        ))
+        db.send_create_signal(u'labels', ['LabelTemplate'])
+
+        # Adding model 'LabelContent'
+        db.create_table(u'labels_labelcontent', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('title', self.gf('django.db.models.fields.CharField')(max_length=200, null=True, blank=True)),
+            ('subtitle', self.gf('django.db.models.fields.CharField')(max_length=200, null=True, blank=True)),
+            ('text', self.gf('django.db.models.fields.CharField')(max_length=200, null=True, blank=True)),
+            ('barcode', self.gf('django.db.models.fields.CharField')(max_length=200, null=True, blank=True)),
+            ('template', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['labels.LabelTemplate'])),
+            ('creator', self.gf('django.db.models.fields.CharField')(max_length=200)),
+        ))
+        db.send_create_signal(u'labels', ['LabelContent'])
+
+
+    def backwards(self, orm):
+        # Deleting model 'LabelPrinter'
+        db.delete_table(u'labels_labelprinter')
+
+        # Deleting model 'LabelTemplate'
+        db.delete_table(u'labels_labeltemplate')
+
+        # Deleting model 'LabelContent'
+        db.delete_table(u'labels_labelcontent')
+
+
+    models = {
+        u'labels.labelcontent': {
+            'Meta': {'object_name': 'LabelContent'},
+            'barcode': ('django.db.models.fields.CharField', [], {'max_length': '200', 'null': 'True', 'blank': 'True'}),
+            'creator': ('django.db.models.fields.CharField', [], {'max_length': '200'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'subtitle': ('django.db.models.fields.CharField', [], {'max_length': '200', 'null': 'True', 'blank': 'True'}),
+            'template': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['labels.LabelTemplate']"}),
+            'text': ('django.db.models.fields.CharField', [], {'max_length': '200', 'null': 'True', 'blank': 'True'}),
+            'title': ('django.db.models.fields.CharField', [], {'max_length': '200', 'null': 'True', 'blank': 'True'})
+        },
+        u'labels.labelprinter': {
+            'Meta': {'object_name': 'LabelPrinter'},
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'ip_address': ('django.db.models.fields.IPAddressField', [], {'max_length': '15'}),
+            'labels': ('django.db.models.fields.CharField', [], {'max_length': '200'}),
+            'model': ('django.db.models.fields.CharField', [], {'default': "'ZM400'", 'max_length': '64'}),
+            'name': ('django.db.models.fields.CharField', [], {'max_length': '256'}),
+            'notes': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'})
+        },
+        u'labels.labeltemplate': {
+            'Meta': {'object_name': 'LabelTemplate'},
+            'ZPL_code': ('django.db.models.fields.TextField', [], {}),
+            'description': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'max_length': '200'}),
+            'printer': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['labels.LabelPrinter']"})
+        }
+    }
+
+    complete_apps = ['labels']
\ No newline at end of file

diff --git a/htsworkflow/frontend/labels/migrations/__init__.py b/htsworkflow/frontend/labels/migrations/__init__.py
new file mode 100644 (file)
index 0000000..e69de29

diff --git a/htsworkflow/frontend/samples/migrations/0001_initial.py b/htsworkflow/frontend/samples/migrations/0001_initial.py
new file mode 100644 (file)
index 0000000..8678e3e
--- /dev/null
+++ b/htsworkflow/frontend/samples/migrations/0001_initial.py
@@ -0,0 +1,351 @@
+# -*- coding: utf-8 -*-
+from south.utils import datetime_utils as datetime
+from south.db import db
+from south.v2 import SchemaMigration
+from django.db import models
+
+
+class Migration(SchemaMigration):
+
+    def forwards(self, orm):
+        # Adding model 'Antibody'
+        db.create_table(u'samples_antibody', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('antigene', self.gf('django.db.models.fields.CharField')(max_length=500, db_index=True)),
+            ('nickname', self.gf('django.db.models.fields.CharField')(db_index=True, max_length=20, null=True, blank=True)),
+            ('catalog', self.gf('django.db.models.fields.CharField')(max_length=50, null=True, blank=True)),
+            ('antibodies', self.gf('django.db.models.fields.CharField')(max_length=500, db_index=True)),
+            ('source', self.gf('django.db.models.fields.CharField')(db_index=True, max_length=500, null=True, blank=True)),
+            ('biology', self.gf('django.db.models.fields.TextField')(null=True, blank=True)),
+            ('notes', self.gf('django.db.models.fields.TextField')(null=True, blank=True)),
+        ))
+        db.send_create_signal(u'samples', ['Antibody'])
+
+        # Adding model 'Cellline'
+        db.create_table(u'samples_cellline', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('cellline_name', self.gf('django.db.models.fields.CharField')(unique=True, max_length=100, db_index=True)),
+            ('nickname', self.gf('django.db.models.fields.CharField')(db_index=True, max_length=20, null=True, blank=True)),
+            ('notes', self.gf('django.db.models.fields.TextField')(blank=True)),
+        ))
+        db.send_create_signal(u'samples', ['Cellline'])
+
+        # Adding model 'Condition'
+        db.create_table(u'samples_condition', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('condition_name', self.gf('django.db.models.fields.CharField')(unique=True, max_length=2000, db_index=True)),
+            ('nickname', self.gf('django.db.models.fields.CharField')(db_index=True, max_length=20, null=True, blank=True)),
+            ('notes', self.gf('django.db.models.fields.TextField')(blank=True)),
+        ))
+        db.send_create_signal(u'samples', ['Condition'])
+
+        # Adding model 'ExperimentType'
+        db.create_table(u'samples_experimenttype', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('name', self.gf('django.db.models.fields.CharField')(unique=True, max_length=50)),
+        ))
+        db.send_create_signal(u'samples', ['ExperimentType'])
+
+        # Adding model 'Tag'
+        db.create_table(u'samples_tag', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('tag_name', self.gf('django.db.models.fields.CharField')(max_length=100, db_index=True)),
+            ('context', self.gf('django.db.models.fields.CharField')(default='Library', max_length=50)),
+        ))
+        db.send_create_signal(u'samples', ['Tag'])
+
+        # Adding model 'Species'
+        db.create_table(u'samples_species', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('scientific_name', self.gf('django.db.models.fields.CharField')(max_length=256, db_index=True)),
+            ('common_name', self.gf('django.db.models.fields.CharField')(max_length=256, blank=True)),
+        ))
+        db.send_create_signal(u'samples', ['Species'])
+
+        # Adding model 'Affiliation'
+        db.create_table(u'samples_affiliation', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('name', self.gf('django.db.models.fields.CharField')(max_length=256, db_index=True)),
+            ('contact', self.gf('django.db.models.fields.CharField')(max_length=256, null=True, blank=True)),
+            ('email', self.gf('django.db.models.fields.EmailField')(max_length=75, null=True, blank=True)),
+        ))
+        db.send_create_signal(u'samples', ['Affiliation'])
+
+        # Adding unique constraint on 'Affiliation', fields ['name', 'contact']
+        db.create_unique(u'samples_affiliation', ['name', 'contact'])
+
+        # Adding M2M table for field users on 'Affiliation'
+        m2m_table_name = db.shorten_name(u'samples_affiliation_users')
+        db.create_table(m2m_table_name, (
+            ('id', models.AutoField(verbose_name='ID', primary_key=True, auto_created=True)),
+            ('affiliation', models.ForeignKey(orm[u'samples.affiliation'], null=False)),
+            ('htsuser', models.ForeignKey(orm[u'samples.htsuser'], null=False))
+        ))
+        db.create_unique(m2m_table_name, ['affiliation_id', 'htsuser_id'])
+
+        # Adding model 'LibraryType'
+        db.create_table(u'samples_librarytype', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('name', self.gf('django.db.models.fields.CharField')(unique=True, max_length=255)),
+            ('is_paired_end', self.gf('django.db.models.fields.BooleanField')(default=True)),
+            ('can_multiplex', self.gf('django.db.models.fields.BooleanField')(default=True)),
+        ))
+        db.send_create_signal(u'samples', ['LibraryType'])
+
+        # Adding model 'MultiplexIndex'
+        db.create_table(u'samples_multiplexindex', (
+            (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+            ('adapter_type', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['samples.LibraryType'])),
+            ('multiplex_id', self.gf('django.db.models.fields.CharField')(max_length=6)),
+            ('sequence', self.gf('django.db.models.fields.CharField')(max_length=12, null=True, blank=True)),
+        ))
+        db.send_create_signal(u'samples', ['MultiplexIndex'])
+
+        # Adding unique constraint on 'MultiplexIndex', fields ['adapter_type', 'multiplex_id']
+        db.create_unique(u'samples_multiplexindex', ['adapter_type_id', 'multiplex_id'])
+
+        # Adding model 'Library'
+        db.create_table(u'samples_library', (
+            ('id', self.gf('django.db.models.fields.CharField')(max_length=10, primary_key=True)),
+            ('library_name', self.gf('django.db.models.fields.CharField')(unique=True, max_length=100)),
+            ('library_species', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['samples.Species'])),
+            ('hidden', self.gf('django.db.models.fields.BooleanField')(default=False)),
+            ('account_number', self.gf('django.db.models.fields.CharField')(max_length=100, null=True, blank=True)),
+            ('cell_line', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['samples.Cellline'], null=True, blank=True)),
+            ('condition', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['samples.Condition'], null=True, blank=True)),
+            ('antibody', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['samples.Antibody'], null=True, blank=True)),
+            ('replicate', self.gf('django.db.models.fields.PositiveSmallIntegerField')(null=True, blank=True)),
+            ('experiment_type', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['samples.ExperimentType'])),
+            ('library_type', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['samples.LibraryType'], null=True, blank=True)),
+            ('multiplex_id', self.gf('django.db.models.fields.CharField')(max_length=128, null=True, blank=True)),
+            ('creation_date', self.gf('django.db.models.fields.DateField')(null=True, blank=True)),
+            ('made_for', self.gf('django.db.models.fields.CharField')(max_length=50, blank=True)),
+            ('made_by', self.gf('django.db.models.fields.CharField')(default='Lorian', max_length=50, blank=True)),
+            ('stopping_point', self.gf('django.db.models.fields.CharField')(default='Done', max_length=25)),
+            ('amplified_from_sample', self.gf('django.db.models.fields.related.ForeignKey')(blank=True, related_name='amplified_into_sample', null=True, to=orm['samples.Library'])),
+            ('undiluted_concentration', self.gf('django.db.models.fields.DecimalField')(null=True, max_digits=5, decimal_places=2, blank=True)),
+            ('successful_pM', self.gf('django.db.models.fields.DecimalField')(null=True, max_digits=9, decimal_places=1, blank=True)),
+            ('ten_nM_dilution', self.gf('django.db.models.fields.BooleanField')(default=False)),
+            ('gel_cut_size', self.gf('django.db.models.fields.IntegerField')(default=225, null=True, blank=True)),
+            ('insert_size', self.gf('django.db.models.fields.IntegerField')(null=True, blank=True)),
+            ('notes', self.gf('django.db.models.fields.TextField')(blank=True)),
+            ('bioanalyzer_summary', self.gf('django.db.models.fields.TextField')(default='', blank=True)),
+            ('bioanalyzer_concentration', self.gf('django.db.models.fields.DecimalField')(null=True, max_digits=5, decimal_places=2, blank=True)),
+            ('bioanalyzer_image_url', self.gf('django.db.models.fields.URLField')(default='', max_length=200, blank=True)),
+        ))
+        db.send_create_signal(u'samples', ['Library'])
+
+        # Adding M2M table for field affiliations on 'Library'
+        m2m_table_name = db.shorten_name(u'samples_library_affiliations')
+        db.create_table(m2m_table_name, (
+            ('id', models.AutoField(verbose_name='ID', primary_key=True, auto_created=True)),
+            ('library', models.ForeignKey(orm[u'samples.library'], null=False)),
+            ('affiliation', models.ForeignKey(orm[u'samples.affiliation'], null=False))
+        ))
+        db.create_unique(m2m_table_name, ['library_id', 'affiliation_id'])
+
+        # Adding M2M table for field tags on 'Library'
+        m2m_table_name = db.shorten_name(u'samples_library_tags')
+        db.create_table(m2m_table_name, (
+            ('id', models.AutoField(verbose_name='ID', primary_key=True, auto_created=True)),
+            ('library', models.ForeignKey(orm[u'samples.library'], null=False)),
+            ('tag', models.ForeignKey(orm[u'samples.tag'], null=False))
+        ))
+        db.create_unique(m2m_table_name, ['library_id', 'tag_id'])
+
+        # Adding model 'HTSUser'
+        db.create_table(u'samples_htsuser', (
+            (u'user_ptr', self.gf('django.db.models.fields.related.OneToOneField')(to=orm['auth.User'], unique=True, primary_key=True)),
+        ))
+        db.send_create_signal(u'samples', ['HTSUser'])
+
+
+    def backwards(self, orm):
+        # Removing unique constraint on 'MultiplexIndex', fields ['adapter_type', 'multiplex_id']
+        db.delete_unique(u'samples_multiplexindex', ['adapter_type_id', 'multiplex_id'])
+
+        # Removing unique constraint on 'Affiliation', fields ['name', 'contact']
+        db.delete_unique(u'samples_affiliation', ['name', 'contact'])
+
+        # Deleting model 'Antibody'
+        db.delete_table(u'samples_antibody')
+
+        # Deleting model 'Cellline'
+        db.delete_table(u'samples_cellline')
+
+        # Deleting model 'Condition'
+        db.delete_table(u'samples_condition')
+
+        # Deleting model 'ExperimentType'
+        db.delete_table(u'samples_experimenttype')
+
+        # Deleting model 'Tag'
+        db.delete_table(u'samples_tag')
+
+        # Deleting model 'Species'
+        db.delete_table(u'samples_species')
+
+        # Deleting model 'Affiliation'
+        db.delete_table(u'samples_affiliation')
+
+        # Removing M2M table for field users on 'Affiliation'
+        db.delete_table(db.shorten_name(u'samples_affiliation_users'))
+
+        # Deleting model 'LibraryType'
+        db.delete_table(u'samples_librarytype')
+
+        # Deleting model 'MultiplexIndex'
+        db.delete_table(u'samples_multiplexindex')
+
+        # Deleting model 'Library'
+        db.delete_table(u'samples_library')
+
+        # Removing M2M table for field affiliations on 'Library'
+        db.delete_table(db.shorten_name(u'samples_library_affiliations'))
+
+        # Removing M2M table for field tags on 'Library'
+        db.delete_table(db.shorten_name(u'samples_library_tags'))
+
+        # Deleting model 'HTSUser'
+        db.delete_table(u'samples_htsuser')
+
+
+    models = {
+        u'auth.group': {
+            'Meta': {'object_name': 'Group'},
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '80'}),
+            'permissions': ('django.db.models.fields.related.ManyToManyField', [], {'to': u"orm['auth.Permission']", 'symmetrical': 'False', 'blank': 'True'})
+        },
+        u'auth.permission': {
+            'Meta': {'ordering': "(u'content_type__app_label', u'content_type__model', u'codename')", 'unique_together': "((u'content_type', u'codename'),)", 'object_name': 'Permission'},
+            'codename': ('django.db.models.fields.CharField', [], {'max_length': '100'}),
+            'content_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['contenttypes.ContentType']"}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'max_length': '50'})
+        },
+        u'auth.user': {
+            'Meta': {'object_name': 'User'},
+            'date_joined': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now'}),
+            'email': ('django.db.models.fields.EmailField', [], {'max_length': '75', 'blank': 'True'}),
+            'first_name': ('django.db.models.fields.CharField', [], {'max_length': '30', 'blank': 'True'}),
+            'groups': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'related_name': "u'user_set'", 'blank': 'True', 'to': u"orm['auth.Group']"}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'is_active': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),
+            'is_staff': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'is_superuser': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'last_login': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now'}),
+            'last_name': ('django.db.models.fields.CharField', [], {'max_length': '30', 'blank': 'True'}),
+            'password': ('django.db.models.fields.CharField', [], {'max_length': '128'}),
+            'user_permissions': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'related_name': "u'user_set'", 'blank': 'True', 'to': u"orm['auth.Permission']"}),
+            'username': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '30'})
+        },
+        u'contenttypes.contenttype': {
+            'Meta': {'ordering': "('name',)", 'unique_together': "(('app_label', 'model'),)", 'object_name': 'ContentType', 'db_table': "'django_content_type'"},
+            'app_label': ('django.db.models.fields.CharField', [], {'max_length': '100'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'model': ('django.db.models.fields.CharField', [], {'max_length': '100'}),
+            'name': ('django.db.models.fields.CharField', [], {'max_length': '100'})
+        },
+        u'samples.affiliation': {
+            'Meta': {'ordering': "['name', 'contact']", 'unique_together': "(('name', 'contact'),)", 'object_name': 'Affiliation'},
+            'contact': ('django.db.models.fields.CharField', [], {'max_length': '256', 'null': 'True', 'blank': 'True'}),
+            'email': ('django.db.models.fields.EmailField', [], {'max_length': '75', 'null': 'True', 'blank': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'max_length': '256', 'db_index': 'True'}),
+            'users': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'to': u"orm['samples.HTSUser']", 'null': 'True', 'blank': 'True'})
+        },
+        u'samples.antibody': {
+            'Meta': {'ordering': "['antigene']", 'object_name': 'Antibody'},
+            'antibodies': ('django.db.models.fields.CharField', [], {'max_length': '500', 'db_index': 'True'}),
+            'antigene': ('django.db.models.fields.CharField', [], {'max_length': '500', 'db_index': 'True'}),
+            'biology': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),
+            'catalog': ('django.db.models.fields.CharField', [], {'max_length': '50', 'null': 'True', 'blank': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'nickname': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '20', 'null': 'True', 'blank': 'True'}),
+            'notes': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),
+            'source': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '500', 'null': 'True', 'blank': 'True'})
+        },
+        u'samples.cellline': {
+            'Meta': {'ordering': "['cellline_name']", 'object_name': 'Cellline'},
+            'cellline_name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '100', 'db_index': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'nickname': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '20', 'null': 'True', 'blank': 'True'}),
+            'notes': ('django.db.models.fields.TextField', [], {'blank': 'True'})
+        },
+        u'samples.condition': {
+            'Meta': {'ordering': "['condition_name']", 'object_name': 'Condition'},
+            'condition_name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '2000', 'db_index': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'nickname': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '20', 'null': 'True', 'blank': 'True'}),
+            'notes': ('django.db.models.fields.TextField', [], {'blank': 'True'})
+        },
+        u'samples.experimenttype': {
+            'Meta': {'object_name': 'ExperimentType'},
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '50'})
+        },
+        u'samples.htsuser': {
+            'Meta': {'ordering': "['first_name', 'last_name', 'username']", 'object_name': 'HTSUser', '_ormbases': [u'auth.User']},
+            u'user_ptr': ('django.db.models.fields.related.OneToOneField', [], {'to': u"orm['auth.User']", 'unique': 'True', 'primary_key': 'True'})
+        },
+        u'samples.library': {
+            'Meta': {'ordering': "['-id']", 'object_name': 'Library'},
+            'account_number': ('django.db.models.fields.CharField', [], {'max_length': '100', 'null': 'True', 'blank': 'True'}),
+            'affiliations': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'related_name': "'library_affiliations'", 'null': 'True', 'to': u"orm['samples.Affiliation']"}),
+            'amplified_from_sample': ('django.db.models.fields.related.ForeignKey', [], {'blank': 'True', 'related_name': "'amplified_into_sample'", 'null': 'True', 'to': u"orm['samples.Library']"}),
+            'antibody': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Antibody']", 'null': 'True', 'blank': 'True'}),
+            'bioanalyzer_concentration': ('django.db.models.fields.DecimalField', [], {'null': 'True', 'max_digits': '5', 'decimal_places': '2', 'blank': 'True'}),
+            'bioanalyzer_image_url': ('django.db.models.fields.URLField', [], {'default': "''", 'max_length': '200', 'blank': 'True'}),
+            'bioanalyzer_summary': ('django.db.models.fields.TextField', [], {'default': "''", 'blank': 'True'}),
+            'cell_line': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Cellline']", 'null': 'True', 'blank': 'True'}),
+            'condition': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Condition']", 'null': 'True', 'blank': 'True'}),
+            'creation_date': ('django.db.models.fields.DateField', [], {'null': 'True', 'blank': 'True'}),
+            'experiment_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.ExperimentType']"}),
+            'gel_cut_size': ('django.db.models.fields.IntegerField', [], {'default': '225', 'null': 'True', 'blank': 'True'}),
+            'hidden': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'id': ('django.db.models.fields.CharField', [], {'max_length': '10', 'primary_key': 'True'}),
+            'insert_size': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
+            'library_name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '100'}),
+            'library_species': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Species']"}),
+            'library_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.LibraryType']", 'null': 'True', 'blank': 'True'}),
+            'made_by': ('django.db.models.fields.CharField', [], {'default': "'Lorian'", 'max_length': '50', 'blank': 'True'}),
+            'made_for': ('django.db.models.fields.CharField', [], {'max_length': '50', 'blank': 'True'}),
+            'multiplex_id': ('django.db.models.fields.CharField', [], {'max_length': '128', 'null': 'True', 'blank': 'True'}),
+            'notes': ('django.db.models.fields.TextField', [], {'blank': 'True'}),
+            'replicate': ('django.db.models.fields.PositiveSmallIntegerField', [], {'null': 'True', 'blank': 'True'}),
+            'stopping_point': ('django.db.models.fields.CharField', [], {'default': "'Done'", 'max_length': '25'}),
+            'successful_pM': ('django.db.models.fields.DecimalField', [], {'null': 'True', 'max_digits': '9', 'decimal_places': '1', 'blank': 'True'}),
+            'tags': ('django.db.models.fields.related.ManyToManyField', [], {'blank': 'True', 'related_name': "'library_tags'", 'null': 'True', 'symmetrical': 'False', 'to': u"orm['samples.Tag']"}),
+            'ten_nM_dilution': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+            'undiluted_concentration': ('django.db.models.fields.DecimalField', [], {'null': 'True', 'max_digits': '5', 'decimal_places': '2', 'blank': 'True'})
+        },
+        u'samples.librarytype': {
+            'Meta': {'ordering': "['-id']", 'object_name': 'LibraryType'},
+            'can_multiplex': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'is_paired_end': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),
+            'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '255'})
+        },
+        u'samples.multiplexindex': {
+            'Meta': {'unique_together': "(('adapter_type', 'multiplex_id'),)", 'object_name': 'MultiplexIndex'},
+            'adapter_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.LibraryType']"}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'multiplex_id': ('django.db.models.fields.CharField', [], {'max_length': '6'}),
+            'sequence': ('django.db.models.fields.CharField', [], {'max_length': '12', 'null': 'True', 'blank': 'True'})
+        },
+        u'samples.species': {
+            'Meta': {'ordering': "['scientific_name']", 'object_name': 'Species'},
+            'common_name': ('django.db.models.fields.CharField', [], {'max_length': '256', 'blank': 'True'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'scientific_name': ('django.db.models.fields.CharField', [], {'max_length': '256', 'db_index': 'True'})
+        },
+        u'samples.tag': {
+            'Meta': {'ordering': "['context', 'tag_name']", 'object_name': 'Tag'},
+            'context': ('django.db.models.fields.CharField', [], {'default': "'Library'", 'max_length': '50'}),
+            u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+            'tag_name': ('django.db.models.fields.CharField', [], {'max_length': '100', 'db_index': 'True'})
+        }
+    }
+
+    complete_apps = ['samples']
\ No newline at end of file

diff --git a/htsworkflow/frontend/samples/migrations/__init__.py b/htsworkflow/frontend/samples/migrations/__init__.py
new file mode 100644 (file)
index 0000000..e69de29

diff --git a/htsworkflow/settings.py b/htsworkflow/settings.py
index dce3d90c53608f876cf6b786604288513e96b972..34f830d8738e1908d83f53d0a2726b96b078c402 100644 (file)
--- a/htsworkflow/settings.py
+++ b/htsworkflow/settings.py
@@ -42,6 +42,7 @@ INSTALLED_APPS = (
     'django.contrib.messages',
     'django.contrib.staticfiles',
     'django.contrib.humanize',
+    'south',
 
     'htsworkflow.frontend.eland_config',
     'htsworkflow.frontend.samples',