Cache the attributes for each type of fastq file.

Previously it was just using whatever was last as the
set of attributes. Which led to everything being flagged as
FastqRd2

diff --git a/extra/ucsc_encode_submission/ucsc_gather.py b/extra/ucsc_encode_submission/ucsc_gather.py
index 72d7f325e64b9d91966cf603dbd1a7236d683add..d160b219b7014fc01d02d1068276168642cc3c85 100755 (executable)
--- a/extra/ucsc_encode_submission/ucsc_gather.py
+++ b/extra/ucsc_encode_submission/ucsc_gather.py
@@ -268,6 +268,7 @@ def make_submission_ini(host, apidata, library_result_map, paired=True):
         # write other lines
         submission_files = os.listdir(result_dir)
         fastqs = {}
+        fastq_attributes = {}
         for f in submission_files:
             attributes = view_map.find_attributes(f, lib_id)
             if attributes is None:
@@ -278,6 +279,7 @@ def make_submission_ini(host, apidata, library_result_map, paired=True):
                 continue               
             elif attributes.get("type", None) == 'fastq':
                 fastqs.setdefault(ext, set()).add(f)
+                fastq_attributes[ext] = attributes
             else:
                 inifile.extend(
                     make_submission_section(line_counter,
@@ -287,13 +289,13 @@ def make_submission_ini(host, apidata, library_result_map, paired=True):
                     )
                 inifile += ['']
                 line_counter += 1
+                # add in fastqs on a single line.
 
-        # add in fastqs on a single line.
-        for extension, fastq_set in fastqs.items():
+        for extension, fastq_files in fastqs.items():
             inifile.extend(
                 make_submission_section(line_counter, 
-                                        fastq_set,
-                                        attributes[extension])
+                                        fastq_files,
+                                        fastq_attributes[extension])
             )
             inifile += ['']
             line_counter += 1