Update from gaworkflow package to htswdataprod and htswcommon packages.

diff --git a/htswdataprod/htswdataprod/illumina/bustard.py b/htswdataprod/htswdataprod/illumina/bustard.py
index 5a7a1f357bee1e42d74f1c5b8d87bbd8e955c982..422acbfbeba9ae27cb415f182df1e428b915ec3c 100644 (file)
--- a/htswdataprod/htswdataprod/illumina/bustard.py
+++ b/htswdataprod/htswdataprod/illumina/bustard.py
@@ -6,7 +6,7 @@ import os
 import time
 import re
 
-from gaworkflow.pipeline.runfolder import \
+from htswdataprod.runfolder import \
    ElementTree, \
    VERSION_RE, \
    EUROPEAN_STRPTIME

diff --git a/htswdataprod/htswdataprod/illumina/firecrest.py b/htswdataprod/htswdataprod/illumina/firecrest.py
index dd06aecb8d2a5f2f60660d3e52c983e4bcd22360..bab436b15e37fdc4d497c754bba50132572f53f8 100644 (file)
--- a/htswdataprod/htswdataprod/illumina/firecrest.py
+++ b/htswdataprod/htswdataprod/illumina/firecrest.py
@@ -12,7 +12,7 @@ import os
 import re
 import time
 
-from gaworkflow.pipeline.runfolder import \
+from htswdataprod.runfolder import \
    ElementTree, \
    VERSION_RE, \
    EUROPEAN_STRPTIME

diff --git a/htswdataprod/htswdataprod/illumina/gerald.py b/htswdataprod/htswdataprod/illumina/gerald.py
index f2687671c2e95278a532a02e21dfd29788b2d7b2..4ed320ef0521ab5b3084a5bd1082da28dc0758e9 100644 (file)
--- a/htswdataprod/htswdataprod/illumina/gerald.py
+++ b/htswdataprod/htswdataprod/illumina/gerald.py
@@ -9,13 +9,13 @@ import stat
 import time
 import types
 
-from gaworkflow.pipeline.runfolder import \
+from htswdataprod.runfolder import \
    ElementTree, \
    EUROPEAN_STRPTIME, \
    LANES_PER_FLOWCELL, \
    VERSION_RE
-from gaworkflow.util.ethelp import indent, flatten
-from gaworkflow.util.opener import autoopen
+from htswcommon.util.ethelp import indent, flatten
+from htswcommon.util.opener import autoopen
 
 class Gerald(object):
     """