Convert timestamps from the runfolder file to a timezone aware time.

We assume the sequencer was run in the same place as the server software

diff --git a/htsworkflow/frontend/experiments/models.py b/htsworkflow/frontend/experiments/models.py
index 600b9174258098488ecff81b2f75a4f61391a065..ce2f6b7dea877106ba81e154451be6b1ffee9786 100644 (file)
--- a/htsworkflow/frontend/experiments/models.py
+++ b/htsworkflow/frontend/experiments/models.py
@@ -17,6 +17,8 @@ from htsworkflow.frontend.samples.models import Library
 from htsworkflow.util.conversion import parse_flowcell_id
 from htsworkflow.pipelines import runfolder
 
 from htsworkflow.util.conversion import parse_flowcell_id
 from htsworkflow.pipelines import runfolder
 

+import pytz
+

 LOGGER = logging.getLogger(__name__)
 default_pM = 5
 try:
 LOGGER = logging.getLogger(__name__)
 default_pM = 5
 try:


@@ -244,7 +246,8 @@ class FlowCell(models.Model):
             run.runfolder_name = run_xml_data.runfolder_name
             run.cycle_start = run_xml_data.image_analysis.start
             run.cycle_stop = run_xml_data.image_analysis.stop
             run.runfolder_name = run_xml_data.runfolder_name
             run.cycle_start = run_xml_data.image_analysis.start
             run.cycle_stop = run_xml_data.image_analysis.stop

-            run.run_start_time = run_xml_data.image_analysis.date
+            naive_run_start_time = datetime.datetime.fromordinal(run_xml_data.image_analysis.date.toordinal())
+            run.run_start_time = pytz.timezone(settings.TIME_ZONE).localize(naive_run_start_time)

             run.image_software = run_xml_data.image_analysis.software
             run.image_version = run_xml_data.image_analysis.version
             run.basecall_software = run_xml_data.bustard.software
             run.image_software = run_xml_data.image_analysis.software
             run.image_version = run_xml_data.image_analysis.version
             run.basecall_software = run_xml_data.bustard.software