('*.condor', None),
('*.daf', None),
('*.ddf', None),
+
+ ('*ufflinks?0.9.3.genes.gtf', 'GeneDeNovo'),
+ ('*ufflinks?0.9.3.transcripts.gtf', 'TranscriptDeNovo'),
+ ('*GENCODE-v3c.exonFPKM.gtf', 'ExonsGencV3c'),
+ ('*GENCODE-v3c.genes.gtf', 'GeneGencV3c'),
+ ('*GENCODE-v3c.transcripts.gtf', 'TranscriptGencV3c'),
+ ('*GENCODE-v3c.TSS.gtf', 'TSS'),
+ ('*.junctions.bed6+3', 'Junctions'),
+
('*.?ufflinks-0.9.0?genes.expr', 'GeneDeNovo'),
('*.?ufflinks-0.9.0?transcripts.expr', 'TranscriptDeNovo'),
('*.?ufflinks-0.9.0?transcripts.gtf', 'GeneModel'),
+
('*.GENCODE-v3c?genes.expr', 'GeneGCV3c'),
('*.GENCODE-v3c?transcript*.expr', 'TranscriptGCV3c'),
('*.GENCODE-v3c?transcript*.gtf', 'TranscriptGencV3c'),
('*.srf', None),
('*.wig', None),
('*.zip', None),
+ ('transfer_log', None),
]
self.views = {
"GeneModel": {"MapAlgorithm": ma},
"GeneDeNovo": {"MapAlgorithm": ma},
"TranscriptDeNovo": {"MapAlgorithm": ma},
+ "ExonsGencV3c": {"MapAlgorithm": ma},
+ "GeneGencV3c": {"MapAlgorithm": ma},
+ "TSS": {"MapAlgorithm": ma},
"GeneGCV3c": {"MapAlgorithm": ma},
"TranscriptGCV3c": {"MapAlgorithm": ma},
"TranscriptGencV3c": {"MapAlgorithm": ma},