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193a2a8
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I started using ResultLane, so stop treating it like an abstract class.
author
Diane Trout
<diane@caltech.edu>
Fri, 19 Jun 2009 22:49:16 +0000
(22:49 +0000)
committer
Diane Trout
<diane@caltech.edu>
Fri, 19 Jun 2009 22:49:16 +0000
(22:49 +0000)
I needed to initialize the ELAND class with something for the older
run xml files which don't have eland results initialized, So I initialized
some default values so the website wouldn't crash when accessing
these older files.
htsworkflow/pipelines/eland.py
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diff --git
a/htsworkflow/pipelines/eland.py
b/htsworkflow/pipelines/eland.py
index 2e0d9dce3a907f97974c13a7f3edf49b07b85bd8..5f3a345d3447ae84e95f292f9216f5802c9d669a 100644
(file)
--- a/
htsworkflow/pipelines/eland.py
+++ b/
htsworkflow/pipelines/eland.py
@@
-52,7
+52,7
@@
class ResultLane(object):
"""
Actually read the file and actually count the reads
"""
- raise NotImplementedError("Can't count abstract classes")
+ pass
def _update_name(self):
# extract the sample name