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Add fastq to the raw format add_xoption
author
Diane Trout
<diane@caltech.edu>
Fri, 23 Mar 2012 23:53:47 +0000
(16:53 -0700)
committer
Diane Trout
<diane@caltech.edu>
Fri, 23 Mar 2012 23:53:47 +0000
(16:53 -0700)
scripts/htsw-runfolder
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diff --git
a/scripts/htsw-runfolder
b/scripts/htsw-runfolder
index d4310b55b3a54885a865b92170d4059526e645f9..e0b993776e7f52d4f0d0ebc9aa1a7f5feceb2dbe 100755
(executable)
--- a/
scripts/htsw-runfolder
+++ b/
scripts/htsw-runfolder
@@
-174,7
+174,7
@@
def make_parser():
help='create srf files tagged with the provided '\
'site name')
parser.add_option('--raw-format', dest="raw_format", default='qseq',
- choices=['qseq', 'srf'],
+ choices=['qseq', 'srf'
, 'fastq'
],
help='Specify which type of raw format to use. '
'Currently supported options: qseq, srf, fastq')
parser.add_option('-u', '--use-run', dest='use_run', default=None,