Django 1.7 docs pointed out unittest2 was backported into
python 2.7, so they dropped their version.
51 files changed:
#!/usr/bin/env python
from datetime import datetime
import os
#!/usr/bin/env python
from datetime import datetime
import os
-from unittest2 import TestCase
+from unittest import TestCase
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestEncodeFind))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestEncodeFind))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
-from unittest2 import TestCase, TestSuite, defaultTestLoader
+from unittest import TestCase, TestSuite, defaultTestLoader
return suite
if __name__ == "__main__":
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest='suite')
main(defaultTest='suite')
-from unittest2 import TestCase
+from unittest import TestCase
import os
from htsworkflow.automation.solexa import is_runfolder
import os
from htsworkflow.automation.solexa import is_runfolder
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testRunner))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testRunner))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.automation import solexa
from htsworkflow.automation import solexa
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testSolexaRunfolderUtils))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testSolexaRunfolderUtils))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
self.assertEqual(len(errmsgs), 0)
def suite():
self.assertEqual(len(errmsgs), 0)
def suite():
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
for testcase in [ClusterStationTestCases,
SequencerTestCases,
suite = TestSuite()
for testcase in [ClusterStationTestCases,
SequencerTestCases,
return suite
if __name__ == "__main__":
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
return flowcells
def suite():
return flowcells
def suite():
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(InventoryTestCase))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(InventoryTestCase))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(SimpleTest))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(SimpleTest))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
return model
def suite():
return model
def suite():
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(LibraryTestCase))
suite.addTests(defaultTestLoader.loadTestsFromTestCase(SampleWebTestCase))
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(LibraryTestCase))
suite.addTests(defaultTestLoader.loadTestsFromTestCase(SampleWebTestCase))
return suite
if __name__ == "__main__":
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
import os
import tempfile
import shutil
import os
import tempfile
import shutil
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.pipelines.test.simulate_runfolder import TESTDATA_DIR
from htsworkflow.pipelines.test.simulate_runfolder import TESTDATA_DIR
self.assertEqual(run.runfolder_name, '130508_SN787_0146_BC23KDACXX')
def suite():
self.assertEqual(run.runfolder_name, '130508_SN787_0146_BC23KDACXX')
def suite():
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(AlignmentFreeRunfolderTests))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(AlignmentFreeRunfolderTests))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
"""More direct synthetic test cases for the eland output file processing
"""
from StringIO import StringIO
"""More direct synthetic test cases for the eland output file processing
"""
from StringIO import StringIO
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.pipelines.eland import ELAND, ElandLane, ElandMatches, \
SampleKey, MatchCodes, MappedReads
from htsworkflow.pipelines.eland import ELAND, ElandLane, ElandMatches, \
SampleKey, MatchCodes, MappedReads
self.assertEqual(len(em[key11112]), 2)
def suite():
self.assertEqual(len(em[key11112]), 2)
def suite():
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(MatchCodeTests))
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestMappedReads))
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(MatchCodeTests))
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestMappedReads))
if __name__ == "__main__":
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
import tempfile
import shutil
import sys
import tempfile
import shutil
import sys
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.pipelines import eland
from htsworkflow.pipelines import ipar
from htsworkflow.pipelines import eland
from htsworkflow.pipelines import ipar
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderExtractTests))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderExtractTests))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
-from unittest2 import TestCase
+from unittest import TestCase
from StringIO import StringIO
from htsworkflow.pipelines import genome_mapper
from StringIO import StringIO
from htsworkflow.pipelines import genome_mapper
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testGenomeMapper))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testGenomeMapper))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
from StringIO import StringIO
import shutil
import tempfile
from StringIO import StringIO
import shutil
import tempfile
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.pipelines import ElementTree
from htsworkflow.pipelines import genomemap
from htsworkflow.pipelines import ElementTree
from htsworkflow.pipelines import genomemap
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestGenomeMap))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestGenomeMap))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
-from unittest2 import TestCase
+from unittest import TestCase
from StringIO import StringIO
from simulate_runfolder import TESTDATA_DIR
from StringIO import StringIO
from simulate_runfolder import TESTDATA_DIR
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testLoadRunXML))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testLoadRunXML))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
import os
import tempfile
import shutil
import os
import tempfile
import shutil
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.pipelines import firecrest
from htsworkflow.pipelines import bustard
from htsworkflow.pipelines import firecrest
from htsworkflow.pipelines import bustard
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
import os
import tempfile
import shutil
import os
import tempfile
import shutil
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.pipelines import firecrest
from htsworkflow.pipelines import bustard
from htsworkflow.pipelines import firecrest
from htsworkflow.pipelines import bustard
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
import os
import tempfile
import shutil
import os
import tempfile
import shutil
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.pipelines import firecrest
from htsworkflow.pipelines import bustard
from htsworkflow.pipelines import firecrest
from htsworkflow.pipelines import bustard
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
import os
import tempfile
import shutil
import os
import tempfile
import shutil
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.pipelines import bustard
from htsworkflow.pipelines import eland
from htsworkflow.pipelines import bustard
from htsworkflow.pipelines import eland
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
import os
import tempfile
import shutil
import os
import tempfile
import shutil
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.pipelines import ipar
from htsworkflow.pipelines import bustard
from htsworkflow.pipelines import ipar
from htsworkflow.pipelines import bustard
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
import os
import tempfile
import shutil
import os
import tempfile
import shutil
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.pipelines import eland
from htsworkflow.pipelines import ipar
from htsworkflow.pipelines import eland
from htsworkflow.pipelines import ipar
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
import os
import tempfile
import shutil
import os
import tempfile
import shutil
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.pipelines import firecrest
from htsworkflow.pipelines import bustard
from htsworkflow.pipelines import firecrest
from htsworkflow.pipelines import bustard
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
import os
import tempfile
import shutil
import os
import tempfile
import shutil
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.pipelines import eland
from htsworkflow.pipelines import ipar
from htsworkflow.pipelines import eland
from htsworkflow.pipelines import ipar
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
import os
import tempfile
import shutil
import os
import tempfile
import shutil
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.pipelines import eland
from htsworkflow.pipelines import ipar
from htsworkflow.pipelines import eland
from htsworkflow.pipelines import ipar
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
import os
import tempfile
import shutil
import os
import tempfile
import shutil
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.pipelines import eland
from htsworkflow.pipelines import ipar
from htsworkflow.pipelines import eland
from htsworkflow.pipelines import ipar
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
import os
import tempfile
import shutil
import os
import tempfile
import shutil
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.pipelines import eland
from htsworkflow.pipelines.samplekey import SampleKey
from htsworkflow.pipelines import eland
from htsworkflow.pipelines.samplekey import SampleKey
self.failIfEqual(r2.gerald, None)
def suite():
self.failIfEqual(r2.gerald, None)
def suite():
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
-from unittest2 import TestCase, TestSuite, defaultTestLoader
+from unittest import TestCase, TestSuite, defaultTestLoader
from htsworkflow.pipelines import runfolder
class TestRunfolderUtilities(TestCase):
from htsworkflow.pipelines import runfolder
class TestRunfolderUtilities(TestCase):
return suite
if __name__ == "__main__":
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
"""More direct synthetic test cases for the eland output file processing
"""
from StringIO import StringIO
"""More direct synthetic test cases for the eland output file processing
"""
from StringIO import StringIO
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.pipelines.samplekey import SampleKey
from htsworkflow.pipelines.samplekey import SampleKey
self.assertTrue(k3.matches(q3))
def suite():
self.assertTrue(k3.matches(q3))
def suite():
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestSampleKey))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestSampleKey))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
import os
import shutil
import tempfile
import os
import shutil
import tempfile
-from unittest2 import TestCase
+from unittest import TestCase
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(SequenceFileTests))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(SequenceFileTests))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
#!/usr/bin/env python
import os
from StringIO import StringIO
#!/usr/bin/env python
import os
from StringIO import StringIO
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.pipelines import summary
from simulate_runfolder import TESTDATA_DIR
from htsworkflow.pipelines import summary
from simulate_runfolder import TESTDATA_DIR
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(SummaryTests))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(SummaryTests))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestCondorFastq))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestCondorFastq))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest='suite')
main(defaultTest='suite')
from StringIO import StringIO
import shutil
import tempfile
from StringIO import StringIO
import shutil
import tempfile
-from unittest2 import TestCase, TestSuite, defaultTestLoader
+from unittest import TestCase, TestSuite, defaultTestLoader
from htsworkflow.submission import daf, results
from htsworkflow.util.rdfhelp import \
from htsworkflow.submission import daf, results
from htsworkflow.util.rdfhelp import \
if __name__ == "__main__":
logging.basicConfig(level=logging.DEBUG)
if __name__ == "__main__":
logging.basicConfig(level=logging.DEBUG)
- from unittest2 import main
+ from unittest import main
main(defaultTest='suite')
main(defaultTest='suite')
import json
import os
from pprint import pprint
import json
import os
from pprint import pprint
-from unittest2 import TestCase, TestSuite, defaultTestLoader, skip
+from unittest import TestCase, TestSuite, defaultTestLoader, skip
from htsworkflow.submission.encoded import (ENCODED,
ENCODED_CONTEXT,
from htsworkflow.submission.encoded import (ENCODED,
ENCODED_CONTEXT,
return suite
if __name__ == "__main__":
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest='suite')
main(defaultTest='suite')
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.submission.fastqname import FastqName
class TestFastqName(TestCase):
from htsworkflow.submission.fastqname import FastqName
class TestFastqName(TestCase):
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestFastqName))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestFastqName))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest='suite')
main(defaultTest='suite')
from pprint import pprint
import shutil
from pprint import pprint
import shutil
-from unittest2 import TestCase, defaultTestLoader
+from unittest import TestCase, defaultTestLoader
from htsworkflow.submission.results import ResultMap
from submission_test_common import *
from htsworkflow.submission.results import ResultMap
from submission_test_common import *
if __name__ == "__main__":
import logging
logging.basicConfig(level=logging.DEBUG)
if __name__ == "__main__":
import logging
logging.basicConfig(level=logging.DEBUG)
- from unittest2 import main
+ from unittest import main
main(defaultTest='suite')
main(defaultTest='suite')
from StringIO import StringIO
import shutil
import tempfile
from StringIO import StringIO
import shutil
import tempfile
-from unittest2 import TestCase, TestSuite, defaultTestLoader
+from unittest import TestCase, TestSuite, defaultTestLoader
from htsworkflow.submission import daf, results
from htsworkflow.util.rdfhelp import \
from htsworkflow.submission import daf, results
from htsworkflow.util.rdfhelp import \
return suite
if __name__ == "__main__":
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest='suite')
main(defaultTest='suite')
-from unittest2 import TestCase, TestSuite, defaultTestLoader
+from unittest import TestCase, TestSuite, defaultTestLoader
from StringIO import StringIO
from htsworkflow.submission import ucsc
from StringIO import StringIO
from htsworkflow.submission import ucsc
return suite
if __name__ == "__main__":
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest='suite')
main(defaultTest='suite')
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.util.alphanum import alphanum
from htsworkflow.util.alphanum import alphanum
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testAlphanum))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testAlphanum))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.util import api
from htsworkflow.util import api
self.failUnless(k1 != k2)
def suite():
self.failUnless(k1 != k2)
def suite():
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestApi))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestApi))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.util import conversion
from htsworkflow.util import conversion
self.failUnlessEqual(s.stop, 2)
def suite():
self.failUnlessEqual(s.stop, 2)
def suite():
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestConversion))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestConversion))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
-from unittest2 import TestCase
+from unittest import TestCase
try:
from xml.etree import ElementTree
try:
from xml.etree import ElementTree
self.failUnless(flatten(self.foo_tree), 'asdf')
def suite():
self.failUnless(flatten(self.foo_tree), 'asdf')
def suite():
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testETHelper))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testETHelper))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
import os
from StringIO import StringIO
import os
from StringIO import StringIO
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.util import makebed
from htsworkflow.util import makebed
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testMakeBed))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testMakeBed))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
import os
import logging
import time
import os
import logging
import time
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.util.queuecommands import QueueCommands
from htsworkflow.util.queuecommands import QueueCommands
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testQueueCommands))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testQueueCommands))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
-from unittest2 import TestCase
+from unittest import TestCase
from datetime import datetime
from datetime import datetime
print "Unable to test rdfhelp"
def suite():
print "Unable to test rdfhelp"
def suite():
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestRDFHelp))
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestRDFSchemas))
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestRDFHelp))
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestRDFSchemas))
if __name__ == "__main__":
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
-from unittest2 import TestCase
+from unittest import TestCase
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestInfer))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestInfer))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
-from unittest2 import TestCase, TestSuite, defaultTestLoader, skip
+from unittest import TestCase, TestSuite, defaultTestLoader, skip
from htsworkflow.util.rdfjsonld import load_into_model, to_node, triple_to_statement
from htsworkflow.util.rdfhelp import get_model
from htsworkflow.util.rdfjsonld import load_into_model, to_node, triple_to_statement
from htsworkflow.util.rdfhelp import get_model
return suite
if __name__ == "__main__":
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest='suite')
main(defaultTest='suite')
"""Test wrappers around ucsc file formats
"""
import os
"""Test wrappers around ucsc file formats
"""
import os
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.util.test import TEST_DATA_DIR
from htsworkflow.util.ucsc import bigWigInfo
from htsworkflow.util.test import TEST_DATA_DIR
from htsworkflow.util.ucsc import bigWigInfo
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.util.url import normalize_url, parse_ssh_url
from htsworkflow.util.url import normalize_url, parse_ssh_url
self.assertRaises(ValueError, parse_ssh_url, 'hello')
def suite():
self.assertRaises(ValueError, parse_ssh_url, 'hello')
def suite():
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestURLUtilities))
return suite
if __name__ == '__main__':
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestURLUtilities))
return suite
if __name__ == '__main__':
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
import os
from StringIO import StringIO
import os
from StringIO import StringIO
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.util import validate
from htsworkflow.util import validate
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testValidate))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testValidate))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
-from unittest2 import TestCase
+from unittest import TestCase
from htsworkflow.util import version
from htsworkflow.util import version
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTest(defaultTestLoader.loadTestsFromTestCase(TestVersion))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTest(defaultTestLoader.loadTestsFromTestCase(TestVersion))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testCopier))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testCopier))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")
import os
from StringIO import StringIO
import sys
import os
from StringIO import StringIO
import sys
-from unittest2 import TestCase
+from unittest import TestCase
_module_path, _module_name = os.path.split(__file__)
sys.path.append(os.path.join(_module_path, '..', 'scripts'))
_module_path, _module_name = os.path.split(__file__)
sys.path.append(os.path.join(_module_path, '..', 'scripts'))
- from unittest2 import TestSuite, defaultTestLoader
+ from unittest import TestSuite, defaultTestLoader
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testSrf2Fastq))
return suite
if __name__ == "__main__":
suite = TestSuite()
suite.addTests(defaultTestLoader.loadTestsFromTestCase(testSrf2Fastq))
return suite
if __name__ == "__main__":
- from unittest2 import main
+ from unittest import main
main(defaultTest="suite")
main(defaultTest="suite")