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remove some commented out code
author
Diane Trout
<diane@ghic.org>
Thu, 29 Jan 2015 19:44:16 +0000
(11:44 -0800)
committer
Diane Trout
<diane@ghic.org>
Thu, 29 Jan 2015 19:44:16 +0000
(11:44 -0800)
htsworkflow/submission/test/test_daf.py
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diff --git
a/htsworkflow/submission/test/test_daf.py
b/htsworkflow/submission/test/test_daf.py
index 87a0cd1c6afe4a3d82156e8c343e2a9752457599..bfaa0b0eb1429b62334e0322640a0adf09a43eae 100644
(file)
--- a/
htsworkflow/submission/test/test_daf.py
+++ b/
htsworkflow/submission/test/test_daf.py
@@
-160,11
+160,6
@@
def load_daf_mapper(name, extra_statements=None, ns=None, test_daf=test_daf):
mapper = daf.UCSCSubmission(name, daf_file = test_daf_stream, model=model)
return mapper
mapper = daf.UCSCSubmission(name, daf_file = test_daf_stream, model=model)
return mapper
-def dump_model(model):
- writer = get_serializer()
- turtle = writer.serialize_model_to_string(model)
- print turtle
-
class TestUCSCSubmission(TestCase):
def setUp(self):
class TestUCSCSubmission(TestCase):
def setUp(self):
@@
-204,7
+199,6
@@
thisView:FastqRd1 dafTerm:filename_re ".*_r1\\\\.fastq" .
view = daf_mapper.find_view('filename_r1.fastq')
view = daf_mapper.find_view('filename_r1.fastq')
- # dump_model(daf_mapper.model)
view_root = 'http://jumpgate.caltech.edu/wiki/SubmissionsLog/{0}/view/'
view_root = view_root.format(name)
self.failUnlessEqual(str(view.uri),
view_root = 'http://jumpgate.caltech.edu/wiki/SubmissionsLog/{0}/view/'
view_root = view_root.format(name)
self.failUnlessEqual(str(view.uri),
@@
-258,8
+252,6
@@
thisView:FastqRd1 dafTerm:filename_re ".*\\\\.fastq" ;
libNode,
filename)
libNode,
filename)
- #dump_model(daf_mapper.model)
-
sub_root = "http://jumpgate.caltech.edu/wiki/SubmissionsLog/testfind/"
submission_name = sub_root + analysis_name
source = daf_mapper.model.get_source(rdfNS['type'], submissionOntology['submission'])
sub_root = "http://jumpgate.caltech.edu/wiki/SubmissionsLog/testfind/"
submission_name = sub_root + analysis_name
source = daf_mapper.model.get_source(rdfNS['type'], submissionOntology['submission'])