<http://localhost/library/1000/>
htswlib:cell_line "Cell1000" ;
htswlib:library_id "1000" ;
- htswlib:library_type "Single" ;
+ htswlib:library_type "Single End (non-multiplexed)" ;
htswlib:replicate "1" ;
htswlib:has_lane <http://localhost/lane/1> ;
a htswlib:IlluminaLibrary .
def test_scan_submission_dirs(self):
turtle = get_turtle_header() + """
@prefix thisView: <http://jumpgate.caltech.edu/wiki/SubmissionsLog/test/view/> .
-thisView:Fastq ucscDaf:filename_re ".*[^12]\\.fastq\\.bz2$" ;
+thisView:Fastq ucscDaf:filename_re ".*[^12]\\.fastq$" ;
a geoSoft:raw ;
geoSoft:fileTypeLabel "fastq" ;
ucscDaf:output_type "read" .
-thisView:FastqRead1 ucscDaf:filename_re ".*r1\\.fastq\\.bz2$" ;
+thisView:FastqRead1 ucscDaf:filename_re ".*r1\\.fastq$" ;
a geoSoft:raw ;
geoSoft:fileTypeLabel "fastq" ;
ucscDaf:output_type "read1" .
-thisView:FastqRead2 ucscDaf:filename_re ".*r2\\.fastq\\.bz2$" ;
+thisView:FastqRead2 ucscDaf:filename_re ".*r2\\.fastq$" ;
a geoSoft:raw ;
geoSoft:fileTypeLabel "fastq" ;
ucscDaf:output_type "read2" .