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Tweak timestamp format.
author
Diane Trout
<diane@caltech.edu>
Tue, 8 Jan 2013 01:30:54 +0000
(17:30 -0800)
committer
Diane Trout
<diane@caltech.edu>
Tue, 8 Jan 2013 01:30:54 +0000
(17:30 -0800)
htsworkflow/pipelines/gerald.py
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diff --git
a/htsworkflow/pipelines/gerald.py
b/htsworkflow/pipelines/gerald.py
index 03c7d10e4b15ad9c859387d214361b4bb88d8171..db687ea34e11f77f0255df8cd76f8eca1f87c8df 100644
(file)
--- a/
htsworkflow/pipelines/gerald.py
+++ b/
htsworkflow/pipelines/gerald.py
@@
-177,7
+177,7
@@
class CASAVA(Alignment):
if self.tree is None:
return
if len(self.tree.xpath('TIME_STAMP')) == 0:
if self.tree is None:
return
if len(self.tree.xpath('TIME_STAMP')) == 0:
- time_stamp = self.date.strftime('%
c
')
+ time_stamp = self.date.strftime('%
a %b %d %H:%M:%S %Y
')
time_element = ElementTree.Element('TIME_STAMP')
time_element.text = time_stamp
self.tree.append(time_element)
time_element = ElementTree.Element('TIME_STAMP')
time_element.text = time_stamp
self.tree.append(time_element)
@@
-189,7
+189,7
@@
class CASAVA(Alignment):
if len(time_element) == 1:
timetuple = time.strptime(
time_element[0].text.strip(),
if len(time_element) == 1:
timetuple = time.strptime(
time_element[0].text.strip(),
- "%a %
d %b %Y %I:%M:%S %p
")
+ "%a %
b %d %H:%M:%S %Y
")
return datetime(*timetuple[:6])
return super(CASAVA, self)._get_date()
date = property(_get_date)
return datetime(*timetuple[:6])
return super(CASAVA, self)._get_date()
date = property(_get_date)