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replace % with %% in the library names, so retrieve config's % expansion works.
author
Diane Trout
<diane@caltech.edu>
Mon, 9 Mar 2009 23:36:55 +0000
(23:36 +0000)
committer
Diane Trout
<diane@caltech.edu>
Mon, 9 Mar 2009 23:36:55 +0000
(23:36 +0000)
htsworkflow/frontend/eland_config/views.py
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diff --git
a/htsworkflow/frontend/eland_config/views.py
b/htsworkflow/frontend/eland_config/views.py
index 7f8daac0607557901fe9399f4b1302fc42133ad7..31b970f58b9b4f94e266a939f0a299ac3e849ac6 100644
(file)
--- a/
htsworkflow/frontend/eland_config/views.py
+++ b/
htsworkflow/frontend/eland_config/views.py
@@
-268,22
+268,22
@@
def getElandConfig(flowcell, regenerate=False):
#Convert all newline conventions to unix style
l1d = str(fcObj.lane_1_library.library_id) + '|' \
#Convert all newline conventions to unix style
l1d = str(fcObj.lane_1_library.library_id) + '|' \
- + fcObj.lane_1_library.library_name.replace('\r\n', '\n').replace('\r', '\n')
+ + fcObj.lane_1_library.library_name.replace('\r\n', '\n').replace('\r', '\n')
.replace('%', '%%')
l2d = str(fcObj.lane_2_library.library_id) + '|' \
l2d = str(fcObj.lane_2_library.library_id) + '|' \
- + fcObj.lane_2_library.library_name.replace('\r\n', '\n').replace('\r', '\n')
+ + fcObj.lane_2_library.library_name.replace('\r\n', '\n').replace('\r', '\n')
.replace('%', '%%')
l3d = str(fcObj.lane_3_library.library_id) + '|' \
l3d = str(fcObj.lane_3_library.library_id) + '|' \
- + fcObj.lane_3_library.library_name.replace('\r\n', '\n').replace('\r', '\n')
+ + fcObj.lane_3_library.library_name.replace('\r\n', '\n').replace('\r', '\n')
.replace('%', '%%')
l4d = str(fcObj.lane_4_library.library_id) + '|' \
l4d = str(fcObj.lane_4_library.library_id) + '|' \
- + fcObj.lane_4_library.library_name.replace('\r\n', '\n').replace('\r', '\n')
+ + fcObj.lane_4_library.library_name.replace('\r\n', '\n').replace('\r', '\n')
.replace('%', '%%')
l5d = str(fcObj.lane_5_library.library_id) + '|' \
l5d = str(fcObj.lane_5_library.library_id) + '|' \
- + fcObj.lane_5_library.library_name.replace('\r\n', '\n').replace('\r', '\n')
+ + fcObj.lane_5_library.library_name.replace('\r\n', '\n').replace('\r', '\n')
.replace('%', '%%')
l6d = str(fcObj.lane_6_library.library_id) + '|' \
l6d = str(fcObj.lane_6_library.library_id) + '|' \
- + fcObj.lane_6_library.library_name.replace('\r\n', '\n').replace('\r', '\n')
+ + fcObj.lane_6_library.library_name.replace('\r\n', '\n').replace('\r', '\n')
.replace('%', '%%')
l7d = str(fcObj.lane_7_library.library_id) + '|' \
l7d = str(fcObj.lane_7_library.library_id) + '|' \
- + fcObj.lane_7_library.library_name.replace('\r\n', '\n').replace('\r', '\n')
+ + fcObj.lane_7_library.library_name.replace('\r\n', '\n').replace('\r', '\n')
.replace('%', '%%')
l8d = str(fcObj.lane_8_library.library_id) + '|' \
l8d = str(fcObj.lane_8_library.library_id) + '|' \
- + fcObj.lane_8_library.library_name.replace('\r\n', '\n').replace('\r', '\n')
+ + fcObj.lane_8_library.library_name.replace('\r\n', '\n').replace('\r', '\n')
.replace('%', '%%')
# Turn new lines into indented commented newlines
l1d = l1d.replace('\n', '\n# ')
# Turn new lines into indented commented newlines
l1d = l1d.replace('\n', '\n# ')