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Update the usage string for qseq2fastq
author
Diane Trout
<diane@caltech.edu>
Thu, 7 Jan 2010 20:52:11 +0000
(20:52 +0000)
committer
Diane Trout
<diane@caltech.edu>
Thu, 7 Jan 2010 20:52:11 +0000
(20:52 +0000)
scripts/qseq2fastq
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diff --git
a/scripts/qseq2fastq
b/scripts/qseq2fastq
index 2395dc09654e3fef8cd0fcdfc1966cec335a1a13..1f79b0a06091c218f28e8b61ca97621e2e650ea0 100644
(file)
--- a/
scripts/qseq2fastq
+++ b/
scripts/qseq2fastq
@@
-56,7
+56,8
@@
def qseq2fastq(destination, qseqs, trim=None, pf=False):
destination.write(os.linesep)
def make_parser():
destination.write(os.linesep)
def make_parser():
- parser = OptionParser()
+ usage = "%prog: [options] *_qseq.txt"
+ parser = OptionParser(usage)
parser.add_option('-o', '--output', help='output fastq file', default=None)
parser.add_option('-s', '--slice',
help='specify python slice, e.g. 0:75, 0:-1',
parser.add_option('-o', '--output', help='output fastq file', default=None)
parser.add_option('-s', '--slice',
help='specify python slice, e.g. 0:75, 0:-1',