SCOMBINED_NAME = 'directory'
S1_FILES = [
- os.path.join(S1_NAME, 'file1_l8_r1.fastq'),
- os.path.join(S1_NAME, 'file1_l8_r2.fastq'),
+ os.path.join(S1_NAME, 'file1_l8_r1.fastq.bz2'),
+ os.path.join(S1_NAME, 'file1_l8_r2.fastq.bz2'),
]
S2_FILES = [
os.path.join(S2_NAME, 'file1.bam'),
- os.path.join(S2_NAME, 'file1_l5.fastq'),
+ os.path.join(S2_NAME, 'file1_l5.fastq.bz2'),
]
SCOMBINED_FILES = [
os.path.join(SCOMBINED_NAME, 's1_file1.bam'),
- os.path.join(SCOMBINED_NAME, 's1_l5.fastq'),
+ os.path.join(SCOMBINED_NAME, 's1_l5.fastq.bz2'),
os.path.join(SCOMBINED_NAME, 's2_file1.bam'),
- os.path.join(SCOMBINED_NAME, 's2_l4.read1.fastq'),
- os.path.join(SCOMBINED_NAME, 's2_l4.read2.fastq'),
+ os.path.join(SCOMBINED_NAME, 's2_l4.read1.fastq.bz2'),
+ os.path.join(SCOMBINED_NAME, 's2_l4.read2.fastq.bz2'),
]
TURTLE_PREFIX = htsworkflow.util.rdfhelp.get_turtle_header()