Initial attempt to build a debian packaged version of

htsworkflow. This isn't complete, and you probably shouldn't
install the -web version as I'm not sure I like where its putting
files yet. But I wanted to save my current work.

diff --git a/debian/changelog b/debian/changelog
new file mode 100644 (file)
index 0000000..0012f4c
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+htsworkflow (0.4.5-21-ga698-1) unstable; urgency=low
+
+  * source package automatically created by stdeb 0.6.0
+
+ -- Diane Trout <diane@caltech.edu>  Tue, 04 Jan 2011 11:16:48 -0800

diff --git a/debian/compat b/debian/compat
new file mode 100644 (file)
index 0000000..45a4fb7
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+8

diff --git a/debian/control b/debian/control
new file mode 100644 (file)
index 0000000..c207ba3
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,24 @@
+Source: htsworkflow
+Maintainer: Diane Trout <diane@caltech.edu>
+Section: python
+Priority: optional
+Build-Depends: python-setuptools (>= 0.6b3), debhelper (>= 7), python-support (>= 0.8.4)
+Standards-Version: 3.8.4
+X-Python-Version: >= 2.5
+
+Package: python-htsworkflow
+Architecture: all
+Depends: ${misc:Depends}, ${python:Depends}
+XB-Python-Version: ${python:Versions}
+Provides: ${python:Provides}
+Description: Utilities to help manage high-through-put sequencing
+ This package contains the python library and support scripts
+
+Package: htsworkflow-web
+Architecture: all
+Depends: ${misc:Depends}, ${python:Depends}, python-django, python-htsworkflow, libjs-jquery (>= 1.4)
+XB-Python-Version: ${python:Versions}
+Provides: ${python:Provides}
+Description: Our Illumina orientated sequencing LIMS website
+ This package contains the website configuration and 
+ supporting templates, css, and javascript.

diff --git a/debian/copyright b/debian/copyright
new file mode 100644 (file)
index 0000000..2a01c71
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,12 @@
+This package was debianized by:
+
+    Diane Trout <diane@caltech.edu> on Tue, 04 Jan 2011 15:36:00 -0700
+
+Copyright:
+
+    <Copyright © 2011 California Institue of Technology>
+
+License:
+
+   The license is currently undecided. Please don't redistribute.
+

diff --git a/debian/htsworkflow-web.install b/debian/htsworkflow-web.install
new file mode 100644 (file)
index 0000000..c078264
--- /dev/null
+++ b/debian/htsworkflow-web.install
@@ -0,0 +1,3 @@
+htsworkflow/frontend/static/      /usr/share/htsworkflow-web/static/
+htsworkflow/frontend/templates    /usr/share/htsworkflow-web/templates/
+htsworkflow/frontend/settings.py  /etc/htsworkflow/

diff --git a/debian/htsworkflow-web.links b/debian/htsworkflow-web.links
new file mode 100644 (file)
index 0000000..fda9194
--- /dev/null
+++ b/debian/htsworkflow-web.links
@@ -0,0 +1 @@
+/usr/share/javascript/jquery/jquery.min.js   /usr/share/htsworkflow-web/static/js/jquery.min.js

diff --git a/debian/python-htsworkflow.install b/debian/python-htsworkflow.install
new file mode 100644 (file)
index 0000000..f391d90
--- /dev/null
+++ b/debian/python-htsworkflow.install
@@ -0,0 +1,2 @@
+usr/lib/python2.6/dist-packages/
+usr/bin

diff --git a/debian/python-htsworkflow.preinst b/debian/python-htsworkflow.preinst
new file mode 100644 (file)
index 0000000..976b401
--- /dev/null
+++ b/debian/python-htsworkflow.preinst
@@ -0,0 +1,14 @@
+#! /bin/sh
+
+set -e
+
+# This was added by stdeb to workaround Debian #479852. In a nutshell,
+# pycentral does not remove normally remove its symlinks on an
+# upgrade. Since we're using python-support, however, those symlinks
+# will be broken. This tells python-central to clean up any symlinks.
+if [ -e /var/lib/dpkg/info/python-htsworkflow.list ] && which pycentral >/dev/null 2>&1
+then
+    pycentral pkgremove python-htsworkflow
+fi
+
+#DEBHELPER#

diff --git a/debian/rules b/debian/rules
new file mode 100755 (executable)
index 0000000..08ad667
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,22 @@
+#!/usr/bin/make -f
+
+# This file was automatically generated by stdeb 0.6.0 at
+# Tue, 04 Jan 2011 11:16:48 -0800
+
+# Unset the environment variables set by dpkg-buildpackage. (This is
+# necessary because distutils is brittle with compiler/linker flags
+# set. Specifically, packages using f2py will break without this.)
+unexport CPPFLAGS
+unexport CFLAGS
+unexport CXXFLAGS
+unexport FFLAGS
+unexport LDFLAGS
+
+#exports specified using stdeb Setup-Env-Vars:
+export DH_OPTIONS=
+
+
+%:
+       dh $@
+
+

diff --git a/debian/source/format b/debian/source/format
new file mode 100644 (file)
index 0000000..d3827e7
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+1.0