flowcell_list = []
flowcell_id_list = []
library_id_list = []
-
+
for lts in item.longtermstorage_set.all():
flowcell_list.append(lts.flowcell)
flowcell_id_list.append(lts.flowcell.flowcell_id)
context['library_id_list_21_to_40'] = library_id_list[20:40]
context['library_id_list_41_to_60'] = library_id_list[40:60]
context['library_id_list_61_to_80'] = library_id_list[60:80]
-
+
EXPAND_CONTEXT = {
'Hard Drive': __expand_longtermstorage_context
returns template to use given item_type
"""
assert item_type.printertemplate_set.count() < 2
-
+
# Get the template for item_type
if item_type.printertemplate_set.count() > 0:
printer_template = item_type.printertemplate_set.all()[0]
return printer_template
# Get default
else:
- try:
+ try:
printer_template = PrinterTemplate.objects.get(default=True)
except ObjectDoesNotExist:
msg = "No template for item type (%s) and no default template found" % (item_type.name)
raise ValueError, msg
-
+
return printer_template
-
+
@login_required
def data_items(request):
item_list = Item.objects.all()
d = { 'results': len(item_list) }
rows = []
-
+
for item in item_list:
item_d = {}
item_d['uuid'] = item.uuid
item_d['creation_date'] = item.creation_date.strftime('%Y-%m-%d %H:%M:%S')
item_d['modified_date'] = item.modified_date.strftime('%Y-%m-%d %H:%M:%S')
item_d['location'] = item.location.name
-
+
# Item status if exists
if item.status is None:
item_d['status'] = ''
else:
item_d['status'] = item.status.name
-
+
# Stored flowcells on device
if item.longtermstorage_set.count() > 0:
item_d['flowcells'] = ','.join([ lts.flowcell.flowcell_id for lts in item.longtermstorage_set.all() ])
else:
item_d['flowcells'] = ''
-
+
item_d['type'] = item.item_type.name
rows.append(item_d)
-
+
d['rows'] = rows
-
+
return HttpResponse(json.dumps(d), content_type="application/javascript")
@login_required
-def index(request):
+def all_index(request):
"""
Inventory Index View
"""
# build changelist
item_changelist = ChangeList(request, Item,
- list_filter=[],
+ list_filter=[],
search_fields=[],
list_per_page=200,
queryset=Item.objects.all()
'page_name': 'Inventory Index'
}
context_dict.update(INVENTORY_CONTEXT_DEFAULTS)
-
+
+ return render_to_response('inventory/inventory_all_index.html',
+ context_dict,
+ context_instance=RequestContext(request))
+
+@login_required
+def index(request):
+ """
+ Inventory Index View
+ """
+ # build changelist
+ item_changelist = ChangeList(request, Item,
+ list_filter=[],
+ search_fields=['name'],
+ list_per_page=50,
+ queryset=ItemType.objects.all()
+ )
+
+ context_dict = {
+ 'item_changelist': item_changelist,
+ 'page_name': 'Inventory Index'
+ }
+ context_dict.update(INVENTORY_CONTEXT_DEFAULTS)
+
return render_to_response('inventory/inventory_index.html',
context_dict,
context_instance=RequestContext(request))
-
+
+@login_required
+def itemtype_index(request, name):
+ """
+ Inventory Index View
+ """
+
+ name = name.replace('%20', ' ')
+
+ itemtype = ItemType.objects.get(name=name)
+
+ # build changelist
+ item_changelist = ChangeList(request, Item,
+ list_filter=[],
+ search_fields=[],
+ list_per_page=200,
+ queryset=itemtype.item_set.all()
+ )
+
+ context_dict = {
+ 'item_changelist': item_changelist,
+ 'page_name': 'Inventory Index'
+ }
+ context_dict.update(INVENTORY_CONTEXT_DEFAULTS)
+
+ return render_to_response('inventory/inventory_itemtype_index.html',
+ context_dict,
+ context_instance=RequestContext(request))
+
@login_required
def item_summary_by_barcode(request, barcode_id, msg=''):
item = Item.objects.get(barcode_id=barcode_id)
except ObjectDoesNotExist, e:
item = None
-
+
return item_summary_by_uuid(request, None, msg, item)
-
+
@login_required
def item_summary_by_uuid(request, uuid, msg='', item=None):
item = Item.objects.get(uuid=uuid)
except ObjectDoesNotExist, e:
item = None
-
+
context_dict = {
'page_name': 'Item Summary',
'item': item,
'msg': msg
}
context_dict.update(INVENTORY_CONTEXT_DEFAULTS)
-
+
return render_to_response('inventory/inventory_summary.html',
context_dict,
context_instance=RequestContext(request))
-
-
+
+
def __expand_context(context, item):
"""
#FIXME: Hard coding this for now... need to abstract later.
context = {'item': item}
__expand_context(context, item)
-
+
# Print using barcode_id
if not item.force_use_uuid and (item.barcode_id is None or len(item.barcode_id.strip())):
context['use_uuid'] = False
else:
context['use_uuid'] = True
msg = 'Printing item with UUID: %s' % (item.uuid)
-
+
printer_template = getPrinterTemplateByType(item.item_type)
-
+
c = RequestContext(request, context)
t = Template(printer_template.template)
print_zpl_socket(t.render(c), host=printer_template.printer.ip_address)
-
+
return msg
@login_required
except ObjectDoesNotExist, e:
item = None
msg = "Item with UUID %s does not exist" % (uuid)
-
+
if item is not None:
msg = _item_print(item, request)
-
+
return item_summary_by_uuid(request, uuid, msg)
"""
assert flowcell is not None
assert serial is not None
-
+
LTS_UPDATED = False
SD_UPDATED = False
LIBRARY_UPDATED = False
-
+
###########################################
# Retrieve Storage Device
try:
except ObjectDoesNotExist, e:
msg = "Item with barcode_id of %s not found." % (serial)
raise ObjectDoesNotExist(msg)
-
+
###########################################
# Retrieve FlowCell
- try:
+ try:
fc = FlowCell.objects.get(flowcell_id=flowcell)
except ObjectDoesNotExist, e:
msg = "FlowCell with flowcell_id of %s not found." % (flowcell)
raise ObjectDoesNotExist(msg)
-
+
###########################################
# Retrieve or create LongTermStorage Object
count = fc.longtermstorage_set.count()
# Need a primary keey before linking to storage devices
lts.save()
LTS_UPDATED = True
-
-
+
+
############################################
# Link Storage to Flowcell
-
+
# Add a link to this storage device if it is not already linked.
if sd not in lts.storage_devices.all():
lts.storage_devices.add(sd)
SD_UPDATED = True
-
+
###########################################
# Add Library Links to LTS
for lane in fc.lane_set.all():
if lane.library not in lts.libraries.all():
lts.libraries.add(lane.library)
- LIBRARY_UPDATED = True
-
+ LIBRARY_UPDATED = True
+
# Save Changes
lts.save()
-
+
msg = ['Success:']
if LTS_UPDATED or SD_UPDATED or LIBRARY_UPDATED:
msg.append(' LongTermStorage (LTS) Created: %s' % (LTS_UPDATED))
msg.append(' Libraries updated in LTS: %s' % (LIBRARY_UPDATED))
else:
msg.append(' No Updates Needed.')
-
+
return HttpResponse('\n'.join(msg))
--- /dev/null
+{% extends "base_site.html" %}
+{% load adminmedia admin_list i18n %}
+{% block extrahead %}
+ <script type="text/javascript">
+ $(document).ready(function() {
+ $(window).resize(function() {
+ var window_height = $(window).height();
+ var position = $("#changelist table").position();
+ height = window_height - position.top;
+ $("#changelist table.filtered").height(height);
+ $("#changelist-filter").height(height);
+ });
+ $(window).resize();
+ });
+ </script>
+{% endblock %}
+{% block bodyclass %}change-list{% endblock %}
+{% block coltype %}flex{% endblock %}
+{% block content %}
+<div id="inventory-index-div" >
+ <div class="module{% if cl.has_filters %} filtered{% endif %}" id="changelist">
+ {% block search %}{% search_form item_changelist %}{% endblock %}
+
+ {% block pagination %}{% pagination item_changelist %}{% endblock %}
+
+ {% block filters %}
+ {% if item_changelist.has_filters %}
+ <div id="changelist-filter">
+ <h2 >{% trans 'Filter' %}</h2>
+ {% for spec in item_changelist.filter_specs %}
+ {% admin_list_filter cl spec %}
+ {% endfor %}
+ </div>
+ {% endif %}
+ {% endblock %}
+ {% block summary_stats %}
+ <table class="{% if cl.has_filters %} filtered{% endif %}">
+ <thead >
+ <tr >
+ <td >UUID</td>
+ <td >Barcode ID</td>
+ <td >Location</td>
+ <td >Model</td>
+ <td >Vendor</td>
+ <td >Created</td>
+ <td >Contains</td>
+ </tr>
+ </thead>
+ <tbody >
+ {% for item in item_changelist.get_query_set %}
+ <tr >
+ <td >{{ item.uuid }}</td>
+ <td >{{ item.barcode_id}}</td>
+ <td >{{ item.location }}</td>
+ <td >{{ item.item_type }}</td>
+ <td ></td>
+ <td >{{ item.creation_date }}</td>
+ <td >
+ {% for content in item.longtermstorage_set.all %}
+ {{ content.flowcell }}
+ {% endfor %}
+ </td>
+ </tr>
+ {% endfor %}
+ </tbody>
+ </table>
+ {% endblock %}
+</div>
+{% endblock %}
--- /dev/null
+{% extends "base_site.html" %}
+{% load adminmedia admin_list i18n %}
+{% block extrahead %}
+ <script type="text/javascript">
+ $(document).ready(function() {
+ $(window).resize(function() {
+ var window_height = $(window).height();
+ var position = $("#changelist table").position();
+ height = window_height - position.top;
+ $("#changelist table.filtered").height(height);
+ $("#changelist-filter").height(height);
+ });
+ $(window).resize();
+ });
+ </script>
+{% endblock %}
+{% block bodyclass %}change-list{% endblock %}
+{% block coltype %}flex{% endblock %}
+{% block content %}
+<div id="inventory-index-div" >
+ <div class="module{% if cl.has_filters %} filtered{% endif %}" id="changelist">
+ {% block search %}{% search_form item_changelist %}{% endblock %}
+
+ {% block pagination %}{% pagination item_changelist %}{% endblock %}
+
+ {% block filters %}
+ {% if item_changelist.has_filters %}
+ <div id="changelist-filter">
+ <h2 >{% trans 'Filter' %}</h2>
+ {% for spec in item_changelist.filter_specs %}
+ {% admin_list_filter cl spec %}
+ {% endfor %}
+ </div>
+ {% endif %}
+ {% endblock %}
+ {% block summary_stats %}
+ <table class="{% if cl.has_filters %} filtered{% endif %}">
+ <thead >
+ <tr >
+ <td >UUID</td>
+ <td >Barcode ID</td>
+ <td >Location</td>
+ <td >Model</td>
+ <td >Vendor</td>
+ <td >Created</td>
+ <td >Contains</td>
+ </tr>
+ </thead>
+ <tbody >
+ {% for item in item_changelist.get_query_set %}
+ <tr >
+ <td ><a href="/inventory/{{ item.uuid }}/">{{ item.uuid }}</a></td>
+ <td ><a href="/inventory/{{ item.barcode_id }}/">{{ item.barcode_id }}</a></td>
+ <td >{{ item.location }}</td>
+ <td >{{ item.item_type }}</td>
+ <td ></td>
+ <td >{{ item.creation_date }}</td>
+ <td >
+ {% for content in item.longtermstorage_set.all %}
+ {{ content.flowcell }}
+ {% endfor %}
+ </td>
+ </tr>
+ {% endfor %}
+ </tbody>
+ </table>
+ {% endblock %}
+</div>
+{% endblock %}
projects / htsworkflow.git / commitdiff