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Fix typo in srf command
author
Diane Trout
<diane@caltech.edu>
Tue, 1 Dec 2009 22:19:09 +0000
(22:19 +0000)
committer
Diane Trout
<diane@caltech.edu>
Tue, 1 Dec 2009 22:19:09 +0000
(22:19 +0000)
scripts/srf
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diff --git
a/scripts/srf
b/scripts/srf
index 5a06d5d9af24ddb491a5f5c79b7c79137355eff6..d363a4e63ed4d0e248db6cee433b02504ee7d70c 100644
(file)
--- a/
scripts/srf
+++ b/
scripts/srf
@@
-6,7
+6,7
@@
import os
import sys
from htsworkflow.pipelines import runfolder
import sys
from htsworkflow.pipelines import runfolder
-from htsworkflow.pipelines.srf import make_commands, run_srf_commands
+from htsworkflow.pipelines.srf import make_commands, run_srf_commands
, pathname_to_run_name
from htsworkflow.pipelines.srf import ILLUMINA2SRF10, ILLUMINA2SRF11, SOLEXA2SRF
def make_parser():
from htsworkflow.pipelines.srf import ILLUMINA2SRF10, ILLUMINA2SRF11, SOLEXA2SRF
def make_parser():
@@
-106,7
+106,7
@@
def main(cmdline=None):
if not opts.dry_run:
for cwd, cmd_list in cmds.items():
if not opts.dry_run:
for cwd, cmd_list in cmds.items():
- run_srf_command(cwd, cmd_list, opts.jobs)
+ run_srf_command
s
(cwd, cmd_list, opts.jobs)
else:
for cwd, cmd_list in cmds.items():
print cwd
else:
for cwd, cmd_list in cmds.items():
print cwd