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Fix a typo and a missing .items() from the change of storing list of result directories.
author
Diane Trout
<diane@caltech.edu>
Mon, 16 Apr 2012 18:42:34 +0000
(11:42 -0700)
committer
Diane Trout
<diane@caltech.edu>
Mon, 16 Apr 2012 18:42:34 +0000
(11:42 -0700)
encode_submission/ucsc_gather.py
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diff --git
a/encode_submission/ucsc_gather.py
b/encode_submission/ucsc_gather.py
index 1cdf0118f6f990943adec84ab90492be44f360fe..0ed8f7e34d2885927a966ab11e2d3ac280818890 100644
(file)
--- a/
encode_submission/ucsc_gather.py
+++ b/
encode_submission/ucsc_gather.py
@@
-56,7
+56,7
@@
def main(cmdline=None):
model = get_model(opts.model, opts.db_path)
mapper = None
if opts.name:
model = get_model(opts.model, opts.db_path)
mapper = None
if opts.name:
- mapper = UCSCSubmssion(opts.name, opts.daf, model)
+ mapper = UCSCSubm
i
ssion(opts.name, opts.daf, model)
if opts.library_url is not None:
mapper.library_url = opts.library_url
submission_uri = get_submission_uri(opts.name)
if opts.library_url is not None:
mapper.library_url = opts.library_url
submission_uri = get_submission_uri(opts.name)
@@
-157,7
+157,7
@@
def make_parser():
def make_all_ddfs(view_map, library_result_map, daf_name, make_condor=True, force=False):
dag_fragment = []
def make_all_ddfs(view_map, library_result_map, daf_name, make_condor=True, force=False):
dag_fragment = []
- for lib_id, result_dir in library_result_map:
+ for lib_id, result_dir in library_result_map
.items()
:
submissionNode = view_map.get_submission_node(result_dir)
dag_fragment.extend(
make_ddf(view_map, submissionNode, daf_name, make_condor, result_dir)
submissionNode = view_map.get_submission_node(result_dir)
dag_fragment.extend(
make_ddf(view_map, submissionNode, daf_name, make_condor, result_dir)