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update make-tree-library script with new default location
author
Diane Trout
<diane@caltech.edu>
Mon, 22 Dec 2008 22:50:46 +0000
(22:50 +0000)
committer
Diane Trout
<diane@caltech.edu>
Mon, 22 Dec 2008 22:50:46 +0000
(22:50 +0000)
scripts/make-library-tree
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diff --git
a/scripts/make-library-tree
b/scripts/make-library-tree
index f61b3b593b9b09adc3623f54302499e636870e26..57414c466b0b3853ed2272b4d221c7b10884a96f 100644
(file)
--- a/
scripts/make-library-tree
+++ b/
scripts/make-library-tree
@@
-8,7
+8,7
@@
import os
import stat
import sys
import stat
import sys
-from
ga
workflow.util import fctracker
+from
hts
workflow.util import fctracker
def find_lanes(flowcell_dir, flowcell_id, lane):
def find_lanes(flowcell_dir, flowcell_id, lane):
@@
-170,7
+170,7
@@
def main(argv=None):
fcdb = fctracker.fctracker(opt.database)
cells = fcdb._get_flowcells(opt.where)
fcdb = fctracker.fctracker(opt.database)
cells = fcdb._get_flowcells(opt.where)
- root_dir = '/woldlab/
mus
/solexa-sequence'
+ root_dir = '/woldlab/
loxcyc/data00
/solexa-sequence'
library_dir = os.path.join(root_dir, 'libraries')
flowcell_dir = os.path.join(root_dir, 'flowcells')
srfs_dir = os.path.join(root_dir, 'srfs')
library_dir = os.path.join(root_dir, 'libraries')
flowcell_dir = os.path.join(root_dir, 'flowcells')
srfs_dir = os.path.join(root_dir, 'srfs')