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Update old dt-overrides.turtle example to use the newer library urls
author
Diane Trout
<diane@caltech.edu>
Wed, 20 Jul 2011 00:34:53 +0000
(17:34 -0700)
committer
Diane Trout
<diane@caltech.edu>
Wed, 20 Jul 2011 00:34:53 +0000
(17:34 -0700)
extra/ucsc_encode_submission/dt-overrides.turtle
patch
|
blob
|
history
diff --git
a/extra/ucsc_encode_submission/dt-overrides.turtle
b/extra/ucsc_encode_submission/dt-overrides.turtle
index 30f372c114954463e3fbc1fa950d0ea089e6aa25..888326c9f3e40306e934a12e21a129ee91d1ab30 100644
(file)
--- a/
extra/ucsc_encode_submission/dt-overrides.turtle
+++ b/
extra/ucsc_encode_submission/dt-overrides.turtle
@@
-9,55
+9,55
@@
# woldlab-hepg2-rnaseq-2009dec
<http://encodesubmit.ucsc.edu/pipeline/show/805>
# woldlab-hepg2-rnaseq-2009dec
<http://encodesubmit.ucsc.edu/pipeline/show/805>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879
/
> .
# woldlab-hepg2-rnaseq-2009dec-part2
<http://encodesubmit.ucsc.edu/pipeline/show/810>
# woldlab-hepg2-rnaseq-2009dec-part2
<http://encodesubmit.ucsc.edu/pipeline/show/810>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879
/
> .
# woldlab-hepg2-rnaseq-2009dec-part3\t
<http://encodesubmit.ucsc.edu/pipeline/show/869>
# woldlab-hepg2-rnaseq-2009dec-part3\t
<http://encodesubmit.ucsc.edu/pipeline/show/869>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879
/
> .
# woldlab-rnaseq-GM12878-rep1-stranded-2010Jan15
<http://encodesubmit.ucsc.edu/pipeline/show/870>
# woldlab-rnaseq-GM12878-rep1-stranded-2010Jan15
<http://encodesubmit.ucsc.edu/pipeline/show/870>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11011> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11011
/
> .
# woldlab-hepg2-rnaseq-2010Jan-part4
<http://encodesubmit.ucsc.edu/pipeline/show/897>
# woldlab-hepg2-rnaseq-2010Jan-part4
<http://encodesubmit.ucsc.edu/pipeline/show/897>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879
/
> .
# woldlab-gm12878-directional-rep2-rnaseq-2010Jan06
<http://encodesubmit.ucsc.edu/pipeline/show/898>
# woldlab-gm12878-directional-rep2-rnaseq-2010Jan06
<http://encodesubmit.ucsc.edu/pipeline/show/898>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010
/
> .
# woldlab-K562-directional-rnaseq-rep1-2010Jan6
<http://encodesubmit.ucsc.edu/pipeline/show/903>
# woldlab-K562-directional-rnaseq-rep1-2010Jan6
<http://encodesubmit.ucsc.edu/pipeline/show/903>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010
/
> .
# woldlab-K562-directional-rnaseq-rep2-2010jan9
<http://encodesubmit.ucsc.edu/pipeline/show/904>
# woldlab-K562-directional-rnaseq-rep2-2010jan9
<http://encodesubmit.ucsc.edu/pipeline/show/904>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11007> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11007
/
> .
# woldlab hESC 10886 rep1 2009Jan13
<http://encodesubmit.ucsc.edu/pipeline/show/1026>
# woldlab hESC 10886 rep1 2009Jan13
<http://encodesubmit.ucsc.edu/pipeline/show/1026>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11286> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11286
/
> .
# woldlab 2010Jun15 1x75-Directional-NHEK-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/1483>
# woldlab 2010Jun15 1x75-Directional-NHEK-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/1483>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11204> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11204
/
> .
# woldlab Jun18 1x75-Directional-H1-hESC-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/1626>
# woldlab Jun18 1x75-Directional-H1-hESC-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/1626>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11009> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11009
/
> .
# woldlab jun 18 1x75-Directional-GM12878-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/1631>
# woldlab jun 18 1x75-Directional-GM12878-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/1631>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11011> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11011
/
> .
# woldlab jun 18 1x75-Directional-GM12878-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/1632>
# woldlab jun 18 1x75-Directional-GM12878-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/1632>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010
/
> .
# woldlab jun 18 1x75-Directional-H1-hESC-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/1633>
# woldlab jun 18 1x75-Directional-H1-hESC-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/1633>
@@
-65,39
+65,39
@@
# woldlab jun 18 1x75-Directional-HeLa-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/1634>
# woldlab jun 18 1x75-Directional-HeLa-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/1634>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11208> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11208
/
> .
# woldlab jun 18 1x75-Directional-HeLa-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/1635>
# woldlab jun 18 1x75-Directional-HeLa-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/1635>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11207> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11207
/
> .
# woldlab jun 18 1x75-Directional-HepG2-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/1636>
# woldlab jun 18 1x75-Directional-HepG2-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/1636>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11210> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11210
/
> .
# woldlab jun 18 1x75-Directional-K562-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/1637>
# woldlab jun 18 1x75-Directional-K562-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/1637>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11008> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11008
/
> .
# woldlab jun 18 1x75-Directional-HepG2-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/1638>
# woldlab jun 18 1x75-Directional-HepG2-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/1638>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11209> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11209
/
> .
# woldlab jun 18 1x75-Directional-HUVEC-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/1639>
# woldlab jun 18 1x75-Directional-HUVEC-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/1639>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11206> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11206
/
> .
# woldlab jun 18 1x75-Directional-HUVEC-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/1645>
# woldlab jun 18 1x75-Directional-HUVEC-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/1645>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11205> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11205
/
> .
# woldlab jun 18 1x75-Directional-K562-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/1646>
# woldlab jun 18 1x75-Directional-K562-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/1646>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11007> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11007
/
> .
# woldlab June 2x75-GM12878-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/1856>
# woldlab June 2x75-GM12878-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/1856>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10515> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10515
/
> .
#2010 jul 9corrected fastqs
<http://encodesubmit.ucsc.edu/pipeline/show/1874>
#2010 jul 9corrected fastqs
<http://encodesubmit.ucsc.edu/pipeline/show/1874>
@@
-106,53
+106,52
@@
# 2010-11-05 Correction 1x75-Directional-GM12878-Rep1.tgz
<http://encodesubmit.ucsc.edu/pipeline/show/2926>
# 2010-11-05 Correction 1x75-Directional-GM12878-Rep1.tgz
<http://encodesubmit.ucsc.edu/pipeline/show/2926>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010
/
> .
# 1x75-Directional-GM12878-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/2930>
# 1x75-Directional-GM12878-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/2930>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010
/
> .
# 1x75-Directional-H1-hESC-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/2931>
# 1x75-Directional-H1-hESC-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/2931>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10947> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10947
/
> .
# 1x75-Directional-H1-hESC-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/2932>
# 1x75-Directional-H1-hESC-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/2932>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11205> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11205
/
> .
# 1x75-Directional-HUVEC-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/2933>
# 1x75-Directional-HUVEC-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/2933>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11206> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11206
/
> .
# 1x75-Directional-HUVEC-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/2934>
# 1x75-Directional-HUVEC-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/2934>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11205> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11205
/
> .
# 1x75-Directional-HeLa-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/2935>
# 1x75-Directional-HeLa-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/2935>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11208> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11208
/
> .
# 1x75-Directional-HeLa-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/2936>
# 1x75-Directional-HeLa-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/2936>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11207> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11207
/
> .
# 1x75-Directional-HepG2-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/2937>
# 1x75-Directional-HepG2-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/2937>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11210> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11210
/
> .
# 1x75-Directional-HepG2-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/2938>
# 1x75-Directional-HepG2-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/2938>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11209> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11209
/
> .
# 1x75-Directional-K562-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/2939>
# 1x75-Directional-K562-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/2939>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11008> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11008
/
> .
# 1x75-Directional-K562-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/2940>
# 1x75-Directional-K562-Rep2
<http://encodesubmit.ucsc.edu/pipeline/show/2940>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11007> .
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11007
/
> .
# 1x75-Directional-NHEK-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/2941>
# 1x75-Directional-NHEK-Rep1
<http://encodesubmit.ucsc.edu/pipeline/show/2941>
- encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11204> .
-
+ encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11204/> .