Took our some old targets from the Makefile that are going unused.

diff --git a/htswanalysis/scripts/LibrariesMakefile b/htswanalysis/scripts/LibrariesMakefile
index c7612dc25d884a948157e7a1cc8b6f46cb00ea35..8b882e2448a75a6697a51e9545bb1aa910768fc1 100644 (file)
--- a/htswanalysis/scripts/LibrariesMakefile
+++ b/htswanalysis/scripts/LibrariesMakefile
@@ -29,7 +29,7 @@ CMPLX_FILES=$(shell ls -1d $(DATA_DIR)/Flowcells/**/*.align*.txt 2>> LibrariesMa
 PROFILE_FILES=$(shell ls -1d $(DATA_DIR)/Flowcells/**/*.align*.txt 2>> LibrariesMakefile.err | sed -e s/txt/txt.profile/)
 LIBFILES=$(shell ls -1d $(DATA_DIR)/Libraries/.*.config 2>> LibrariesMakefile.err | sed -e s/config/txt/ -e "s/\/./\//")
 
-all: $(QPCR_FILES) $(COUNT_FILES) $(FILES) qPCR_summary.txt qPCR_summary.html LibraryInfo.xml $(LIBFILES) SequencingLaneSummary.html SequencingSummary.html Distribute
+all: $(QPCR_FILES) $(COUNT_FILES) $(FILES) qPCR_summary.txt LibraryInfo.xml $(LIBFILES) SequencingSummary.html Distribute
 
 %.txt.complexity: %.txt
        $(ROOT_DIR)/bin/complexity_count `basename $<` $< > $@
@@ -52,9 +52,6 @@ qPCR_summary.txt: $(QPCR_FILES)
        for f in $^; do echo `echo $$f`       `cat $$f | head -n 1` >> qPCR_summary.txt; done;
        cat qPCR_summary.txt | sort -k 2,1 -g -r > t; mv t qPCR_summary.txt;
 
-#qPCR_summary.html: qPCR_summary.txt;
-       #cat qPCR_summary.txt | ~/Summarize_qPCR.pm > qPCR_summary.html
-
 LibraryInfo.xml: $(COUNT_FILES) $(CMPLX_FILES)
        $(ROOT_DIR)/scripts/CollectLibraries.pm > LibraryInfo.xml
        $(ROOT_DIR)/scripts/RecompileLibraries.pm LibraryInfo.xml
@@ -62,11 +59,7 @@ LibraryInfo.xml: $(COUNT_FILES) $(CMPLX_FILES)
 SequencingSummary.html: LibraryInfo.xml
        $(ROOT_DIR)/scripts/SummarizeLibrary.pm LibraryInfo.xml > SequencingSummary.html
 
-#SequencingLaneSummary.html: LibraryInfo.xml
-       #~/SummarizeLanes.pm LibraryInfo.xml > SequencingLaneSummary.html
-
-#Distribute: SequencingSummary.html qPCR_summary.html SequencingLaneSummary.html
-Distribute: SequencingSummary.html
+Distribute: SequencingSummary.html qPCR_summary.txt
        cp $^ $(HTML_DIR);
 
 Libraries: $(LIBFILES)