Deleted obsolete tests

what this was testing is now over in htsworkflow.submission.daf.test_daf

diff --git a/extra/ucsc_encode_submission/test_ucsc_gather.py b/extra/ucsc_encode_submission/test_ucsc_gather.py
index 64f712d8734952a9928a90544b18d6d075c19f1e..d7d54e6b23ed4e05b3c97af5b8493121ded1ab68 100644 (file)
--- a/extra/ucsc_encode_submission/test_ucsc_gather.py
+++ b/extra/ucsc_encode_submission/test_ucsc_gather.py
@@ -3,72 +3,10 @@ import unittest
 import ucsc_gather
 
 class testUCSCGather(unittest.TestCase):
-    def test_view_attribute_map(self):
-        view_map = ucsc_gather.NameToViewMap()
-        view_map.lib_cache["0"] = {
-            "cell_line": "NLHF",
-            "replicate": "1",
-            "lane_set": {},
-            }
-    
-        a = view_map.find_attributes("foo.ini", "0")    
-        self.failUnless(a["view"] is None)
-    
-        a = view_map.find_attributes("asdf.fdsa", "0")
-        self.failUnless(a is None)
-    
-        a = view_map.find_attributes("foo.fastq", "0")
-        self.failUnlessEqual(a["view"], "Fastq", "0")
-    
-        a = view_map.find_attributes("foo_r1.fastq", "0")
-        self.failUnlessEqual(a["view"], "FastqRd1", "0")
-
-    def test_get_library_info_paired(self):
-        view_map = ucsc_gather.NameToViewMap()
-        view_map.lib_cache["11588"] = {
-            u'antibody_id': None,
-            u'cell_line': u'NHLF',
-            u'cell_line_id': 13,
-            u'experiment_type': u'RNA-seq',
-            u'experiment_type_id': 4,
-            u'gel_cut_size': 300,
-            u'hidden': False,
-            u'id': u'11588',
-            u'insert_size': 200,
-            u'lane_set': [{u'flowcell': u'61PKCAAXX',
-                           u'lane_number': 8,
-                           u'paired_end': True,
-                           u'read_length': 76,
-                           u'status': u'Unknown',
-                           u'status_code': None},
-                          {u'flowcell': u'61PKLAAXX',
-                           u'lane_number': 8,
-                           u'paired_end': True,
-                           u'read_length': 76,
-                           u'status': u'Unknown',
-                           u'status_code': None}],
-            u'library_id': u'11588',
-            u'library_name': u'Paired ends 254 NHLF 31',
-            u'library_species': u'Homo sapiens',
-            u'library_species_id': 8,
-            u'library_type': u'Paired End',
-            u'library_type_id': 2,
-            u'made_by': u'Brian',
-            u'made_for': u'Brian',
-            u'notes': u'300 bp gel fragment, SPRI beads cleanup',
-            u'replicate': 2,
-            u'stopping_point': u'1Aa',
-            u'successful_pM': None,
-            u'undiluted_concentration': u'26.2'}
-
-        a = view_map.find_attributes("foo.bam", "11588")
-        self.failUnlessEqual(a["view"], "Paired")
-        self.failUnlessEqual(a["insertLength"], 200)
-
+    pass
 
 def suite():
     return unittest.makeSuite(testUCSCGather,"test")
 
 if __name__ == "__main__":
     unittest.main(defaultTest="suite")
-