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Older librdf gets cranky when mixing unicode & strings
author
Diane Trout
<diane@caltech.edu>
Thu, 30 Jun 2011 22:44:57 +0000
(15:44 -0700)
committer
Diane Trout
<diane@caltech.edu>
Thu, 30 Jun 2011 22:44:57 +0000
(15:44 -0700)
htsworkflow/submission/daf.py
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diff --git
a/htsworkflow/submission/daf.py
b/htsworkflow/submission/daf.py
index 28f75999ce80974198a8dad9858524c06b896d71..75c8868ea9f0716f0cfc775853d144cc556eac93 100644
(file)
--- a/
htsworkflow/submission/daf.py
+++ b/
htsworkflow/submission/daf.py
@@
-260,7
+260,7
@@
class DAFMapper(object):
submission_name = self.make_submission_name(submission_dir)
submissionNode = self.get_submission_node(submission_dir)
submission_uri = str(submissionNode.uri)
submission_name = self.make_submission_name(submission_dir)
submissionNode = self.get_submission_node(submission_dir)
submission_uri = str(submissionNode.uri)
- view_name =
fromTypedNode(self.model.get_target(view, dafTermOntology['name']
))
+ view_name =
str(fromTypedNode(self.model.get_target(view, dafTermOntology['name'])
))
submissionView = RDF.Node(RDF.Uri(submission_uri + '/' + view_name))
self.model.add_statement(
submissionView = RDF.Node(RDF.Uri(submission_uri + '/' + view_name))
self.model.add_statement(
@@
-287,7
+287,7
@@
class DAFMapper(object):
# Add everything I can find
for term in terms:
# Add everything I can find
for term in terms:
- value = s
elf._get_library_attribute(libNode, term
)
+ value = s
tr(self._get_library_attribute(libNode, term)
)
if value is not None:
self.model.add_statement(RDF.Statement(submissionView, term, value))
if value is not None:
self.model.add_statement(RDF.Statement(submissionView, term, value))