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remove cruft from an unimplemented feature
merge-proposal
author
Diane Trout
<diane@caltech.edu>
Tue, 17 Feb 2009 22:45:51 +0000
(22:45 +0000)
committer
Diane Trout
<diane@caltech.edu>
Tue, 17 Feb 2009 22:45:51 +0000
(22:45 +0000)
htsworkflow/pipelines/configure_run.py
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diff --git
a/htsworkflow/pipelines/configure_run.py
b/htsworkflow/pipelines/configure_run.py
index 2174de1b31dc084b1cc67930a87184be65fb78d3..4d5cf868040a5d4296f5004e6c04601e150b12f5 100644
(file)
--- a/
htsworkflow/pipelines/configure_run.py
+++ b/
htsworkflow/pipelines/configure_run.py
@@
-351,8
+351,7
@@
def pipeline_stderr_handler(line, conf_info):
return False
return False
-def retrieve_config(conf_info, flowcell, cfg_filepath, genome_dir,
- cfg_defaults=None):
+def retrieve_config(conf_info, flowcell, cfg_filepath, genome_dir):
"""
Gets the config file from server...
requires config file in:
"""
Gets the config file from server...
requires config file in:
@@
-366,7
+365,7
@@
def retrieve_config(conf_info, flowcell, cfg_filepath, genome_dir,
return True if successful, False is failure
"""
return True if successful, False is failure
"""
- options = getCombinedOptions(
cfg_defaults
)
+ options = getCombinedOptions()
if options.url is None:
logging.error("%s or %s missing base_host_url option" % \
if options.url is None:
logging.error("%s or %s missing base_host_url option" % \